Pseudomonas fluorescens AU11136, AA055_RS04125
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11136 Contig_56, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCTGGTACTTCCTGGTGCCCGATCTGCTGCCGCCGGACTTGCAGGAGTGGTACAAGCAAGACCTCAACCCGACCACCTCGGCTTATCTGAGCGTCGTGG TGTGCCTGGGCCTGTTCACCGCCGCCCGGGTGTGCGAACAAGTGCGTACCGGTATCGAAGCGCTGCCCCGCGGTCAGGAGTCAGCCGCTCGCGCCATGGG TTTCAGCATGACGCAGATTTACTGGCACGTGCTGCTGCCGCAGGCGTACCGGATCATCATTCCGCCCCTCACCTCCGAATTCCTCAACGTGTTCAAGAAC TCGTCGGTGGCCTCGTTGATCGGTTTGATGGAACTGCTGGCGCAAACCAAACAGACAGCCGAATTCTCAGCCAACCTGTTTGAAGCCTTCACATTGGCCA CGTTGATTTACTTCACCTTGAACATGAGCCTGATGTTGCTCATGCGCCTGATCGAGAAGAAAGTCGCCGTACCCGGCCTCATGTCTCTGGGGGGCAAATA
|
|
| DNA Sequence for Gene |
>AA055_RS04125
ATGGACTTCTTTGATTTCAGCGGGATCGTCCCTGCCCTGCCGGGCCTGTGGAACGGCATGATCATGACCCTCAAGCTGATGGTGATGGGCGTGATCGGCG GCGTAGCGCTGGGGACCGTTTTGGCCCTCATGCGCCTGTCTTCAAGCAAGTGGCTGTCCAATCTGGCGGGCGCCTACGTCAACTACTTCCGCTCGATTCC GTTGCTGCTGGTCATCACCTGGTTCTACCTGGCCGTTCCCTTCGTGCTGCGCTGGATCACGGGTGAAGACACCCCGATCGGCGCCTTCGAGTCGTGCCTG GTGGCATTCGTCATGTTCGAAGCGGCGTACTTCTGCGAGATCGTGCGAGCGGGCGTACAAGCCATTCCTAAAGGCCAGATGGGCGCCGCCAAAGCGCTGG GCATGAGTTACGGCCAGGCCATGCGCCTGATCATCCTGCCTCAGGCATTCCGCAAAATGACCCCGCTGCTGCTGCAACAAAGCATCATCCTGTTCCAGGA CACCTCGCTGGTTTACACCGTAGGCCTTGTGGACTTCCTCAATGCCTCGCGCTCAAGCGGCGATATCATCGGCCGCTCCAATGAGTTCCTGATCTTCGCC GGTCTGGTGTATTTCATCATCAGCTTTTCCGCCTCGCTGCTGGTCAAGCGTCTGCAAAAAAGGTTTGCCGTATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCTCGATCAAGAACATCAACAAGTGGTACGGGGACTTTCAGGTACTGACCGATTGCAGTACTGAAGTCAAAAAAGGTGAAGTGGTGGTGGTCTGCGGGCC ATCGGGCTCCGGCAAGTCGACCCTGATCAAGTGCGTCAACGCCCTTGAACCGTTCCAGAAAGGCGACATCGTAGTGGACGGCATTTCGATAGCCGACCCT AAAACCAACCTGCCGAAATTGCGTTCGCGCGTGGGCATGGTGTTCCAGCATTTCGAACTGTTCCCGCACATGACCATCACCGAAAACCTGACCATTGCTC AGGTCAAGGTACTGGGGCGCAGCAAAGCCGAAGCCACCAAAAAAGGCCTTGAGTTGCTGGAACGCGTGGGCTTGTCGGCCCACGCCCACAAACACCCTGG CCAACTGTCGGGCGGCCAGCAACAGCGTGTGGCGATTGCCCGTGCGCTGGCGATGGACCCGATTGTCATGCTGTTTGACGAACCCACTTCAGCCCTCGAC
|
|
| Amino Acid Sequence |
>amino acid ABC transporter permease
MDFFDFSGIVPALPGLWNGMIMTLKLMVMGVIGGVALGTVLALMRLSSSKWLSNLAGAYVNYFRSIPLLLVITWFYLAVPFVLRWITGEDTPIGAFESCL VAFVMFEAAYFCEIVRAGVQAIPKGQMGAAKALGMSYGQAMRLIILPQAFRKMTPLLLQQSIILFQDTSLVYTVGLVDFLNASRSSGDIIGRSNEFLIFA GLVYFIISFSASLLVKRLQKRFAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|