Pseudomonas fluorescens AU11136, AA055_RS20495
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11136 Contig_51, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCACGGCCCTCGCCCTTTTTGAGCAATGTGCCGACCCGTTCCTTCATCTCGCGCGCCGCCTTGTTGGTAAAGGTCATGGCGACGATGTACTGGGCGCGG ATGCCACAGTTCTGGATCAAGTGCGCGATTTTGCGGGTAATCACGCTGGTTTTGCCCGAGCCCGCGCCGGCGAGCACCAAAAGAGGGCCGCCGACGTAGC TCACGGCTTCTTGCTGCCGGGGATTGAGTCGGGACATGACGAGTCAGGGGGTCGTATCTGAAAAGGGCGGGCATTTTAACAGGCTGAGCAAATATTGCTG CCACTCTGCGACAGTGTGACGTAGCACTCTGTCTAAATTTGCTGCTTTTGTTACTTTCGCGCAGGATGCCGGGCGGATTTGAGGCTACCGTGAGAGGTGG ACCACAAATATGTATTTGATAACCAATGTCATTTGCCATTGGTCGTCGGCGCGTCATAATGCCCACCGCCTGAAATTACTGCAGAGTCTAGGGAGCCAGC
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| DNA Sequence for Gene |
>AA055_RS20495
TTGTCTACGCCTGTCGAACCCTTGCGTTTGCTGCTATTGGCCGAAGAGCCTTCTTGGGCAGCGTTGTTGCGCGAGTGTCTGGCGCCCATAAAAACCGTTG CCGTTCTTGTGTGTGCGCCGAATTGGGAGTCGGTCAGTTATCTGTTCGAAAACGACCGCAATGCGTTGCTGCTCACCACCCCCGCGCTACAACCCGCACC GGGCCGTTGCCGGTTATCGACCATTCTGCTGCTGGAGGCTGAACCCGATGCCTCGCCGCAAGGGGTCAGCGACTGGTTCGTGGCGTCCAACCTGACGACC GATTTATTGCGCCGAAGCCTGCGGCATGTACGCGAGCGCGGCGTACTCGAACACACCTTGCAGCGCTTGGCCGAAGAAGACCCGCTGACCGGCATCGCCA ACCGCCAGGGCTTTCAGACCCTGCTGGCCGTGCGTCTGGCGGAAAGCGAAGGCCGCGGCATCGCCCTCGGGCATCTGGACCTGGACAACTTTCGCCACGC CAACGATGCCCTTGGGCACCAGGCGGGGGATCGCCTGATCCTGCAAGTGGTGGCCCGGCTCAAAAGCCAGCTGGAGGCGGGCGATCAACTGGCCCGACTG GGCAGCGACGAATTCGCCTTGTTGATCGACACCCGCCGCGCCCCCGAACGCGCCGAGCAGATCGCTGAACGCATCACCGAAGCGCTGGCCGAACCTTACT GGATTGACGGCGAGAGCCTGTTGATCGGTTGCAGCCTCGGTATCGCCCATGCGCGCGCCAACGCCGGGGCCGATCCGCTGATGTGGCATGCGCACATCGC CATGCAGCAGGCCAAGAGCACGCAAGGCTGCACGTTTCACCTGTTCAATGAACGCATCAACCGCAACGCCCGCAGCCTGGCAGACCTTGAAAGCGAACTG CGTCGTGCCCTGCGCCGCGACGAGCTGGAGCTGCATTACCAGCCGCGCCTGGATTTGGGCACCGGGCAGATTGTCGGCCTTGAAGCCTTGGTGCGCTGGC GTCACGGCGAACGTGGCCTGCTGGCCCCCAGCGAGTTTGTGCCGCTGGCCGAACAAAGCGGGTTGATTGTGCCGCTGGGCTATTGGGTGATTTCCCGGGC GCTGCGCGACATGCAAGCCCTGCGCGAACACGGGTTTGCGCCGCTGCACATGGCGGTCAACCTGTCGTTCCGGCAATTTCAGGACAGCCAGTTGCTCTCC ACCCTCAGCCGCTTGATTAGCGAGCGCGGGGTCGAGGCGCAATGGCTGGAATTCGAACTGACTGAAACCGCCGTGATGCGGCGCAGCGACCTGGTCAAGC AGACGATGGATGCGCTGGGGCGGCTGGGCGTGAGGTTTTCGCTGGACGACTTCGGGACGGGGTTTTCTTCTTTCGTGCACCTCAACAGCCTGCCGATCGC CTTGTTGAAAATCGACAAAAGTTTCGTCGGCGGCATGGAGAGTCGCGAAGAAAACCGCAAGCTGGTGCCCGCCATGATCAACCTGGCGCACAACCTCAAG CTGGAAGTGGTCGCCGAAGGGGTCGAAACCCCCGAGCAACTGGCCCTGCTGCGTAGCTTTGGCTGCGATCAGGTGCAGGGCTATTTCATCAGCAAGCCCT TGCCACTGACCGAACTGGTGGCCTTCTTGAGCCAGGCCATGGGCAAGCGCGAGGCGGCCTCGCGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGCGCGAGGCTCGGTTACGCCTACAGGCGGATCGTGGCGTTGTGCGCACGCCTGAGCATGCGCCGCATCTTCCACTCGAACGCCAGGGTCAGGCTGATG GCCGCGCACGCGAGCCCCAATGCCAGCCCCCACCACACACCCGCCGGGCCCCAATCGAAGGTGAACGCCAGCAACCAGGCCAGCGGCGCGCCAATGGCCC AGTAGCAGAACAGGCCGACGAGAAAGGTCGTGCGGGCGTCTTTCAGCCCGCGAATCGCGCCCATGGCGATGGTTTGCGCACCGTCGAACAGCTCAAACCA CGCCGCCACCGCCAGCAAGCTCATCGCCAGCTCGAACACCGGGCGGAACGCCAGATTGTCGTAGTCCAGCAACAGGCCGACCAGCTCCTTGGGCCAGAAC CAGAACACCACCGAAAAGCACAGCATGGTCGCCGCGCCAAAGCCGATCCCGACCCGTCCCGCCAGGCGTGCGCGCAACAAATCGCCACCGCCGTAATGCT
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| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLAEEPSWAALLRECLAPIKTVAVLVCAPNWESVSYLFENDRNALLLTTPALQPAPGRCRLSTILLLEAEPDASPQGVSDWFVASNLTT DLLRRSLRHVRERGVLEHTLQRLAEEDPLTGIANRQGFQTLLAVRLAESEGRGIALGHLDLDNFRHANDALGHQAGDRLILQVVARLKSQLEAGDQLARL GSDEFALLIDTRRAPERAEQIAERITEALAEPYWIDGESLLIGCSLGIAHARANAGADPLMWHAHIAMQQAKSTQGCTFHLFNERINRNARSLADLESEL RRALRRDELELHYQPRLDLGTGQIVGLEALVRWRHGERGLLAPSEFVPLAEQSGLIVPLGYWVISRALRDMQALREHGFAPLHMAVNLSFRQFQDSQLLS TLSRLISERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKIDKSFVGGMESREENRKLVPAMINLAHNLK LEVVAEGVETPEQLALLRSFGCDQVQGYFISKPLPLTELVAFLSQAMGKREAASR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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