Pseudomonas fluorescens AU11136, AA055_RS00940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11136 Contig_23, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCTCGGCAGCCTGCTGGGCGTTTTGCTGCACCGGGAACAGATCCGGCTCCTGACTCCAGTACCAGCCGAGCCCCAGGCACACCAGCACATACACACCCA CCAGGGTGGCAATGGAGCGGCTCAGCAAGATGCTTTTGAAATAGCCACGCGGCTCTGTCCTGGTCTCCTTGACCGACTCGCGGGCACTGCCCTCACGTTT TTTCCAGTCCAGCATGGCTATATCCTTTCGATTACTGAATTCAACGGTTCGACCACAACCCTAACCCATCGTGCCTTATATGCCTGTTTTTAATCGCCTG CCGGTTGATCTGCAACAAGGCGCTGGCAACAGGCGGCGGCCACTATAAACCACGCTCGCGCCCCTCACAGAAGGATCTCAACGCCTAAATGTAACCGGCC AACGTTAATTTCGTGTGAGGGCTCGTGCATTTCCAAAGAGCTGCTAGCATAGAGCCACTAGTCGAACCTCAGCATGCCCCACTCACGAAGCAGTCTGGAT
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| DNA Sequence for Gene |
>AA055_RS00940
ATGACCGAGCAAGAAGACCCGAACCGCGAGCGCCTCAAGAACCACTTTGCCCAGCGGGTCATCCATCAGGCACGTCAAATTCTTGAGATCTGGCAACGTT TACAGGGCAATGAATGGGCCCCCTCAGACCTCGCGGAACTCAGCGACGCCAACCTGCGCCTGCTGCGGTTTGCCGCACGCTTCGAGCAGCCCGAGCATTC GCAACTGGCCCGCGCCATCAGCCAGGCCTTGCAGCAGGTCGAGGCCAACCGCGGGCGCCTGAGCAGTACGTTAATTACAGAACTCAACCGCCTGATGCAG CGGTTGTCGCGTACTGGTCTGCGCCACGGCGACCAGCTGGATCACACCTTTCTGCCACCGCTGCGCAAGCCGGTGTACATCCTGCTTCAGGACCATGACC GGGCCGAGCGACTGGCCAAGCAACTGGATTTTTTCGGCCTGGGCGCGCAATCGCTGCCCAGCGTGAATGCCTTTCGCAGCGCCATGGCCGAACGCCTGCC CTGCGCGATCGTGATGGACGTGGATTTCAGTGGCGCCAGCAATGGCCTGCTGCTGGCCGCCGAAGCGCAGGAGGGGCTGGAGCAGAAATTGCCGCTGCTG TTTTTCAGCCTGCATGAAACCGACACCCCCACCCGACTGGCCGCCGTGCGCGCGGGCGGGCAGGAGTTCCTGACCGGCACCCTCGAAGCCTCCAGCCTGA TGGAAAAAATCGAGGTACTGACCTGCGTCGCGCAGTACGAACCGTACAAAGTGCTGATCATTGATGACTCCCGGGCTCAGGCGTTGCACACCGAACGGCT GCTCAACAGCGCCGGGATCGTGACCCGCACCCTGATCGAGCCGATTCAGGCCATGGCCGAACTGGCCGACTTCCAGCCTGACCTGATCATCCTCGACATG TACATGCCCGCCTGCACCGGCACCGAGCTGGCCAAGGTGATCCGCCACAATGATCGCTACGTCAGCGTGCCGATCATTTACCTGTCGGCCGAAGATGACC TGGACAAGCAACTGGACGCCATGAGCGAAGGCGGCGACGACTTCCTGACCAAACCGATCAAACCCCGGCACCTGATTACCACCGTGCGCAACCGCGCCGC CCGGGCACGGCACTTGAAGGCGCGGATGGTGCGCGACAGCCTGACCGGCCTGTACAACCACACGCACATTCTGCAACTACTCGAAGACTGCACCTTCCGC GCCCGCCGCGAAAGTCGCTCGCTGAGCTTTGCCATGATCGACATTGACCATTTCAAGCGGGTCAACGACTCCTACGGCCACCCCATGGGCGACCGGGTGA TCAAAAGCCTGGCGCTGTTCCTCAAACAGCGTTTGCGCAAGACCGATTTCATCGGGCGCTATGGCGGCGAAGAGTTTGCCATTGTGATGCCTGACACCGA TCAGGAAGCGGCCCACGCGGTGTTGAACACCATCCGCGAGCGCTTCTCGGAGATTCATTACCCGGCCCAGCCCACAGATTTATGCTGCACCTTCAGCGCG GGCGTGGTGGAACTCAAAGAGGACACAGACGGCCTGGTCATGGCATCTCAGGCAGACGAAGCGCTGTACCGCGCCAAGCACAACGGGCGCAACCGGATCG AGCGCTTTCACCCGGCAAGGCAAATTGCCACTATTTCGGTCAAATTGCCGAATCCCGTCACATCGCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCACGTGCAATAACTTCAGCCGCTTCTCATTGCGTCGTAGGCAAAATCCCAGATGCGCCTGAAGCTGCTTACCAACCTCAACACCCTGTTGCTGGTCGC CGTGTGCCTCGCCCTCGGCGCCACCCTGGCGTGGTCGCAACACGCGCTTGAACGGCCGTTTCAACTGATGGAACGCTACTTGAGCCTGTCCCAGCAGTTC CAGAACCAGGTGGCGCGCAATATTGAAGATTACCTGGCCAGCGGCGACGCCCTGCGCCTGAGCGATGCCACGACCGCGCTCAACACGCTGAAAACCGAAC TGACCCCGCTCCCGGTTGCGCTGGCCGAGGCCTTGCGCCCCAGCCTCGAACGCCTGAGCACGTACAGTGGCAACGAACTGCTGGCCGCTGGCAAACTGGC CGGTGACCCGCAAGCGTTGCTGTTGCAGGCCGAACGGGAGCTGGGTGCCACTCTGGAGCAACTCAGCCAGTATGCCCATCAAGCCAGCGGCCCCGACGCC
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| Amino Acid Sequence |
>diguanylate cyclase
MTEQEDPNRERLKNHFAQRVIHQARQILEIWQRLQGNEWAPSDLAELSDANLRLLRFAARFEQPEHSQLARAISQALQQVEANRGRLSSTLITELNRLMQ RLSRTGLRHGDQLDHTFLPPLRKPVYILLQDHDRAERLAKQLDFFGLGAQSLPSVNAFRSAMAERLPCAIVMDVDFSGASNGLLLAAEAQEGLEQKLPLL FFSLHETDTPTRLAAVRAGGQEFLTGTLEASSLMEKIEVLTCVAQYEPYKVLIIDDSRAQALHTERLLNSAGIVTRTLIEPIQAMAELADFQPDLIILDM YMPACTGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPIKPRHLITTVRNRAARARHLKARMVRDSLTGLYNHTHILQLLEDCTFR ARRESRSLSFAMIDIDHFKRVNDSYGHPMGDRVIKSLALFLKQRLRKTDFIGRYGGEEFAIVMPDTDQEAAHAVLNTIRERFSEIHYPAQPTDLCCTFSA GVVELKEDTDGLVMASQADEALYRAKHNGRNRIERFHPARQIATISVKLPNPVTSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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