Pseudomonas fluorescens AU11136, AA055_RS06300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11136 Contig_11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCATCATCGACCAGGGCGGTGCCGAGCAACTGCTGGGGCACGGTGACATGCTCTACATGCCGCCTGGCACTAGCTTGCCGATTCGCGTGCATGGCGCG TTTGTGTCCGACGAAGAAGTGCACCGTGTGGTTGAAGCCTGGAAGCTGCGCGGCAGCCCGGATTACAACGACGACATCCTCAGCGGGGTGGAAGAAGCAG GCAGCGGCTTTGAGGGCGGTGGTAGCGAAGGCGGTGATGATGCAGAAACCGACGCCTTGTATGACGAAGCTGTCCAGTTTGTACTGGAAAGCCGTCGCGC CTCTATTTCAGCCGTTCAGCGAAAATTGAAAATCGGCTACAACCGCGCGGCCCGCATGATTGAATCCATGGAAATGGCCGGGGTTGTAACCTCCATGAAC ACCAATGGCTCGCGTGAAGTTCTGGCGCCGGCCCCACTACGCGACTGATCGGCCCGCGGCGCACTCGCGGGCTGGGTTTAACTAATCAAAGAGGGTTTTC
|
|
| DNA Sequence for Gene |
>AA055_RS06300
ATGCGTTTTTTCAGCATGCTGTTGCTACCGGTTCTGGCTATGTCTTCTCTTGCGGCTCATGCCGGCGAACAGGACGTAAAACGGTTAGGCCAACTGTTGG GACAGTCCAATACCATCTCGGCCCGTTTCAGTCAGTTGACGCTGGATGGCAGCGGCACTCAATTGCAGGAAACGGCCGGTGTCATGTCGGTCAAGCGCCC GGGGCTGTTCTACTGGCACACCGATGCGCCTCAAGAACAGACCATGATCTCGGATGGCAATAAAGTCACTCTTTGGGACCCGGACCTGGAGCAGGTGACC ATCAAGAAGCTGGATGAGCGTTTGAACCAGACCCCTGCTTTGCTGTTGTCGGGAGACGTCTCAAAAATTGATCAGAGTTTTGACGTCACCTCCAAGCCGT CGGGAGAGGTGTTGGAGTTCATGTTGAAACCCAAAACCAAAGACACCCTGTTCGACTCGCTCAGGTTGTCTTTCCGCAACGGCAAGATCAACGATATGCA ATTGATCGACAGTGTCGGTCAGCGCACCAATATCCTGTTCAGCGGGGTGAAGGTGAATGAAGACATTCCTGCCAGCACATTCAAGTTTGTCGTGCCCAAA GGTGCTGATGTCATCCAGGAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTCACTGTGCCGATCGGGCGGTGACGCGCGGCTAGTATTTTTCTGGCCGTGCCAGAGCGGTTTTTTCGCGCAGTCAGCGCCCCCGTGGCAGGGCGTGAGC ATCGCCATGGCATTGGCCCGCAGCACACACGTGAGGTTGTTTAAACAGTGATGGACCTGTTTCGAAGTGCACCAATCGCTCAGCCTCTGGCAGCCCGTTT GCGCGCCGCCAATCTGGATGAGTACGTGGGCCAGCAACATCTGTTGGCCCGCGGCAAGCCCCTGCGTGAAGCGCTGGAACAGGGCGCGTTGCACTCGATG ATCTTCTGGGGCCCGCCGGGCGTGGGCAAAACCACGTTGGCGCGGTTGCTGGCGCAAGTGTCTGACGCGCACTTTGAAACCGTGTCAGCGGTGCTGGCGG GGGTTAAAGAGATTCGCCAGGCCGTGGAAGTGGCCAAGCAACAGGCCGGTCAATATGGCCGTCGCACCATCCTGTTCGTCGATGAAGTCCACCGTTTCAA
|
|
| Amino Acid Sequence |
>membrane protein
MRFFSMLLLPVLAMSSLAAHAGEQDVKRLGQLLGQSNTISARFSQLTLDGSGTQLQETAGVMSVKRPGLFYWHTDAPQEQTMISDGNKVTLWDPDLEQVT IKKLDERLNQTPALLLSGDVSKIDQSFDVTSKPSGEVLEFMLKPKTKDTLFDSLRLSFRNGKINDMQLIDSVGQRTNILFSGVKVNEDIPASTFKFVVPK GADVIQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|