Pseudomonas fluorescens AU12597, AA053_RS08170
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU12597 Contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGGGCGACATCCTGGTGCTGGCCCGGCATTTCGCCAAAAAGGCCTGCGCCTTCCTGCGCCGCGACGTCCTGCACTGGTCGCAGGCAGCGCTGGACCATC TGGCGGCTTATCCCTTCCCGGGCAACGTGCGCGAACTCAAAGGGCTGGTCGAACGCGCGGTGCTGCTGTGCGAAGGCCGTGAGCTGATGCCCGAACATTT TGCCCGACGTGCCGACCTGGCCCTGGAAGGCAGCAGCTTGAGCCTGCGTGAGCGTCTGGAGCAAGTGGAGCGCAGTTGGGTGCTCGACTGCCTGCGCAAA AACGATGGCAACCAAACGCTGGCCGCACGGGAACTGGGATTGCCACGCCGCACGTTGCTGTACCGCATGGAGCGCCTGAATGTTCAGGTGGGTGAGCGTG ATGGTTAGCGTGTGCCGTTACCACCCGTGATGCGTGTTTATGAATGGCCACTGTGCCTGCGCAGGCCATTGAATGTTGTTTACGTCTGGAGACACCCCTG
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| DNA Sequence for Gene |
>AA053_RS08170
ATGCCTGTTCGTCACTGGCAAGCCGTGCTGTTGGCCCTCGTCGTTGTATGCGGCGTGAGCGGTTGCAACAGCAATTACAAATTCAACGACAACGTCTATC GCCCCTTGGGTGATCCGCAGGCGGTCAATCGCGGCAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCAAGGAGCAAGATCATGGAACTGGTTTTCGAAATGCTGAACACCAAGCAGTTCGTGCCTGCGCAGTTGTGCCAGAAAACATTCACCCGTGCGGGCGG CGTGATCGGCCGCGCAGCGGACTGTGACTGGGTGATCCCGGACGAAAAGCGGCATCTGTCCAATCACCATGCATTGATCACGTACCGCGACGGTGTGTTT TACCTCACCGACACCAGCACTAACGGCATGCAGGACCGTGAGACCGGCGCACGCCTGCCCAGGGGCGAACCCCTGCGCATTGAAAGCGGCTCCGGCTATG TGCTGGGCGACTTTGAGATTCGTGCGCGGTTGATCCGTGACCCGGCAGGCCCGGACATTGAATTCGGGCTGCCCCAGCCCGCGGGCAGTGTGATTCCGGA CGATGCCTTCTTTGATCTTGATCCGCTCAATGCCCTGACTCAGCTCGACCCGGATGAGGCCAGGATCAACGAACTGCTCAACCCGAAAACGGCCGAGGCG
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| Amino Acid Sequence |
>type VI secretion protein
MPVRHWQAVLLALVVVCGVSGCNSNYKFNDNVYRPLGDPQAVNRGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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