Strain | Pseudomonas fluorescens strain AU12597 Contig_9, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GGTGCTGCTGTGCGAAGGCCGTGAGCTGATGCCCGAACATTTTGCCCGACGTGCCGACCTGGCCCTGGAAGGCAGCAGCTTGAGCCTGCGTGAGCGTCTG GAGCAAGTGGAGCGCAGTTGGGTGCTCGACTGCCTGCGCAAAAACGATGGCAACCAAACGCTGGCCGCACGGGAACTGGGATTGCCACGCCGCACGTTGC TGTACCGCATGGAGCGCCTGAATGTTCAGGTGGGTGAGCGTGATGGTTAGCGTGTGCCGTTACCACCCGTGATGCGTGTTTATGAATGGCCACTGTGCCT GCGCAGGCCATTGAATGTTGTTTACGTCTGGAGACACCCCTGATGCCTGTTCGTCACTGGCAAGCCGTGCTGTTGGCCCTCGTCGTTGTATGCGGCGTGA GCGGTTGCAACAGCAATTACAAATTCAACGACAACGTCTATCGCCCCTTGGGTGATCCGCAGGCGGTCAATCGCGGCAAGTGACCGCAAGGAGCAAGATC
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DNA Sequence for Gene |
>AA053_RS08165
ATGGAACTGGTTTTCGAAATGCTGAACACCAAGCAGTTCGTGCCTGCGCAGTTGTGCCAGAAAACATTCACCCGTGCGGGCGGCGTGATCGGCCGCGCAG CGGACTGTGACTGGGTGATCCCGGACGAAAAGCGGCATCTGTCCAATCACCATGCATTGATCACGTACCGCGACGGTGTGTTTTACCTCACCGACACCAG CACTAACGGCATGCAGGACCGTGAGACCGGCGCACGCCTGCCCAGGGGCGAACCCCTGCGCATTGAAAGCGGCTCCGGCTATGTGCTGGGCGACTTTGAG ATTCGTGCGCGGTTGATCCGTGACCCGGCAGGCCCGGACATTGAATTCGGGCTGCCCCAGCCCGCGGGCAGTGTGATTCCGGACGATGCCTTCTTTGATC TTGATCCGCTCAATGCCCTGACTCAGCTCGACCCGGATGAGGCCAGGATCAACGAACTGCTCAACCCGAAAACGGCCGAGGCGCCACCCCGTCAACGGGC CGATTACGCCCAAATCGATCAGGAACGGCTGATCGTGCCGCACTTGGTCAAAGCCCCTGAACCCGTTGAACCGGTTGCCCCCGCGCCTGCTGTTGAGGAA CAAAGTGATGGCTTTTGGGCGCATTTCGGAGCAGCCCTGGGGGTTGATCTCACGGGCATGGACCACGAGGCCCGCGAAGCCCTCGCACTGAATGCCGCGC GCTTGCTCAAACAAAGCGTCAGCGGGTTGCAGCAAAGCCTGCGCACCCGCAGCGAGTTGAAAAACGAATTGCGTCTGGCGCAAACCACGGTGCAAACCAC GCAAAAAAACCCGTTGAAAGTGGCCATCGACCCGGGTGAAGCCCTTTCGATCCTGCTTCAACCGGGGCGCCCGGGGCAGCTCACGGCCGAACAGGCGGTT GCCCGTGCCTTTCGTGATGTGCAAGCCCATCAGGTGGCGTTGCTGACCGCCAGCCGGGCGGCACTGCGGGGCACCCTGGAACACTTTTCGCCAGAGCGCA TGACCCTGCGTTTCGAGCGGGACAACAAACCGTTGCTGGCCACTTCGGGCAGCCGCTGGAGAGCCTTCACCCGTTATCACCAGGCCTTGCAGCAAGACGA TGACTGGAGCGAACGCCTGCTGGCCCGCGATTTCGCCCAAGCCTACGAAGAACAGGTGCGCCTGATCGGCTCCCTACACCACGACTACCAAGGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AGCGTATGTCTTGCAGCCCGACCCGTGTATTGAAAATGCTGTGTGTAGTTGCCGCGTGGGGACTGATGGCAGGGTGCTCGACCCTGTCGCCGTATTCGAC CCTGACCAAGGTCAACCTCACGCTGCAAGCCAGCGACCAGTTGAACCCGGACCTCAATGGCCGCCCGTCGCCGGTGGTGGTGAGCCTGTTCGAGCTCAAG CACCCGGTGGCGTTCGAGAACGCAGACTTTTTCAGCCTGTATGAACACCCTAAAGAGGCGCTGAGCCCGGACATGGTGACCAGCGAGCAATTGGAGCTGC GTCCCGGTGAAACCCTGGAGCTCAAGCTCAGTGTGGAGGAGGGCAGCCGCTTCATCGGCGTGCTGGCCGCTTATCGCGACCTGCCCGATACGCAGTGGCG CTACACGGTGCAGGTCACGCCGCAGGAGATGACGGACGTTTCGCTGATTCTGGACAAGACCGGCATCCTCAATGCCCAAAAAATGCTCGCCAAGGCGGAT
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Amino Acid Sequence |
>hypothetical protein
MELVFEMLNTKQFVPAQLCQKTFTRAGGVIGRAADCDWVIPDEKRHLSNHHALITYRDGVFYLTDTSTNGMQDRETGARLPRGEPLRIESGSGYVLGDFE IRARLIRDPAGPDIEFGLPQPAGSVIPDDAFFDLDPLNALTQLDPDEARINELLNPKTAEAPPRQRADYAQIDQERLIVPHLVKAPEPVEPVAPAPAVEE QSDGFWAHFGAALGVDLTGMDHEAREALALNAARLLKQSVSGLQQSLRTRSELKNELRLAQTTVQTTQKNPLKVAIDPGEALSILLQPGRPGQLTAEQAV ARAFRDVQAHQVALLTASRAALRGTLEHFSPERMTLRFERDNKPLLATSGSRWRAFTRYHQALQQDDDWSERLLARDFAQAYEEQVRLIGSLHHDYQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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