Strain | Pseudomonas fluorescens strain AU12597 Contig_9, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GACGCCATGCTGGCGTGCCGCGAACGCAGCACGTTCATTCCGATTCTGGCCAACAGCTTCGCGCGGCACACCACTGAAGTGCTGGTCGAACATGCCGAGC GCGAGCACGGCGATTCCAAGTACAGCCCCATGCGCCTGATCAACCTGATGTTCGATCTGGTCACCTGCATGACCACCACGCCGTTGCGCCTGCTGAGCAT CATCGGCTTCAGCATGGCTTTGTTGGGCGGGCTGTTCGCCATCCTGTTGATCGTGTTGCGCCTGATCTTTGGGGCGACCTGGGCCGGTGACGGCACGTTC GTCCTGTTTGCGGTGCTGTTTGTGTTCACCGGCGGACAGTTCATTGGCATGGGCCTGCTGGGTGAATACCTGGGCCGCATGTACAGCGATGTGCGGGCCC GGCCACGCTTCTTTATCGAAAAAATCGTGCGCGCCGAGCCGGCCAAGGCTGACGTTTCGACGACCCCTTCTTCTATTTCCACCTCGACACAGGTCCAATC
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DNA Sequence for Gene |
>AA053_RS06805
ATGAGTTTGAAAGCCGTAGTTTTCGCCTATCACGATATTGGCTGCACCGGCATCGATGCTTTGCTCAACGCTGGGTATGAAATCGCAGCGGTGTTCACCC ATGCTGACGACCCGAAGGAAAACAACTTTTACGGTTCGGTTGCACAGCTGTGCGCGCGCAAAGGCATCCCGGTGCATGCCCCGGAAGACGCCAACCACCC GTTGTGGGTCGAGCGCATTCGCAAACTGAACGCCGATTACCTCTTCTCGTTCTACTACCGCCATTTGCTGGGCGAAGAACTGCTCGCCAGCGTCAGCCAG GGCGCCTTCAACCTGCATGGCTCGTTGCTGCCGCGCTACCGTGGCCGCGCCCCGGCCAACTGGGTGCTGGTCAACGGTGAAACCGAGACCGGCGTCACCC TGCACCGCATGGTCAAACGCGCGGATGCCGGTGCCATTCTGGCCCAGCAGCGGGTCAGCATCGAACGCAGCGACACCGCGCTGAGCCTGCACGCCAAGCT GCGCGAAAGCGCGGCAGCCTTGTTGGCCGAAACCTTGCCCCTGCTGCCGGAAGGCAAGCTGACCGAAACCCCGCAAGACGAATCCAAAGCCACGTACTTC GGGCGTCGCACCGCCGCTGATGGCCTGCTGCAATGGGCGCGTCCGGCTGAAGAACTGTTCAATCTAGTGCGGGCGGTGACGCAACCGTATCCGGGCGCGT TCTGCGCCGTGGGCGAGCACAAACTGATTGTCTGGGCCGCCGAGGTGATGCCGGGCAATGCCGGGCTGGCGCCGGGCCACGTCATCAGCTGTGAGCCCCT GCGCATCGCCTGCGGCAAAGACTCGCTGGTCATCACCGCCGGTCAACGCAACGCCGACGGCCTGTACCTGAGCGGCCCGCAACTGGCCCGCGAACTGGGT CTGGTGGACGGCTCACGCCTGCGCGGCAGTGAGTCAGGGCGCCCTGCCCGCCGCACCCGCGTGCTGATCCTCGGGGTCAACGGGTTTATCGGTAACCACC TGTCCGAGCGCCTGCTGCAAGACGACCGCTACGAAGTGTATGGCCTGGACATCGGCTCCGACGCCATTGACCGCCTGCGCAGCCACCCGAACTTCCACTT TGTGGAAGGCGACATCAGCATCCACACCGAGTGGATCGAGTACCACATCAAAAAATGCGACGTGGTCTTGCCGCTGGTGGCCATCGCCACGCCGATCGAG TACACCCGTAACCCGCTGCGGGTGTTCGAGCTCGACTTCGAGGAAAACCTCAAGCTCGTGCGCTACTGCGTCAAATACAACAAGCGGGTGATTTTCCCGT CGACGTCCGAAGTGTATGGCATGTGCCAGGACAAGAATTTCGACGAAGACACCTCCAACCTGATCGTCGGCCCGATCAACAAGCAGCGCTGGATCTACTC GGTGTCCAAGCAGTTGCTCGACCGGGTGATTTGGGCTTATGGCCAGAAAGGCCTGAAATTCACCCTGTTCCGTCCGTTCAACTGGATGGGCCCGCGTCTG GACCGCCTGGATTCGGCACGGGTGGGCAGCTCGCGCGCCATTACCCAACTGATTTTGCATCTGGTGGAAGGCACGCCGATCCGTCTGGTGGATGGCGGTG AGCAAAAGCGTTGCTTCACCGACGTGGCCGACGGCATCGAAGCACTGGCGCGCATCATCGAAAACCGCGACGGCAAGTGCGACGGCCAGATCATCAACAT CGGCAACCCGGAAAACGAAGCCAGCATCCGTCAACTGGGCGAAGAGTTACTGCGTCAGTTCGAAGCCCACCCGCTGCGCGACAATTTCCCGCCGTTCGCC GGTTTCCGCGACGTTGAGAGCCAGTCGTTCTACGGCACCGGTTATCAGGACGTCAGTCACCGCAAACCGAGCGTTGAAAACGCCCGTCGCCTGATCGACT GGACACCGACCACCGAACTGAGCGAAACCATTGGCAAGACTCTGGACTTCTTCCTGCGTGAAGCCATGGTAGAAATCGCGGAAAAACGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TGCAAGCAGGCCTGCGTATCGACGTCGACACGTACCGCGGAACCCGAGAAGGGGTTCCGCAACTGCTCGAACTGCTGGATGAAGCTCAGATCAAAGCCAC GTTTTTCTTCAGCGTGGGGCCGGATAACATGGGCCGCCATCTGTGGCGGCTGATCAAGCCCCAGTTCTTCTGGAAAATGCTGCGTTCCAAAGCCGCCAGC CTGTATGGCTGGGATATTTTGCTGGCGGGCACCGCCTGGCCGGGCAAACCGATTGGCAAGGAGCTGGGGCACCTGATGCGCCAGACCCTGGCCGCGGGCC ATGAAGTGGGCTTGCACGCGTGGGATCACCACGGCTGGCAAGCCAACGCCGGGCGTTGGTCGCAGGCACAATTGATCGAGCAGATCCGCCGGGGTGTCGA CACCCTGAGCGACATCACCGGCCAGGCGGTCGAGTGTTCGGCCGCCGCGGGCTGGCGCGCCGATGAACGCGTGGTCGAGGCCAAGCAGGCCTTTGGCTTT
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Amino Acid Sequence |
>UDP-4-amino-4-deoxy-L-arabinose formyltransferase
MSLKAVVFAYHDIGCTGIDALLNAGYEIAAVFTHADDPKENNFYGSVAQLCARKGIPVHAPEDANHPLWVERIRKLNADYLFSFYYRHLLGEELLASVSQ GAFNLHGSLLPRYRGRAPANWVLVNGETETGVTLHRMVKRADAGAILAQQRVSIERSDTALSLHAKLRESAAALLAETLPLLPEGKLTETPQDESKATYF GRRTAADGLLQWARPAEELFNLVRAVTQPYPGAFCAVGEHKLIVWAAEVMPGNAGLAPGHVISCEPLRIACGKDSLVITAGQRNADGLYLSGPQLARELG LVDGSRLRGSESGRPARRTRVLILGVNGFIGNHLSERLLQDDRYEVYGLDIGSDAIDRLRSHPNFHFVEGDISIHTEWIEYHIKKCDVVLPLVAIATPIE YTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDKNFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGQKGLKFTLFRPFNWMGPRL DRLDSARVGSSRAITQLILHLVEGTPIRLVDGGEQKRCFTDVADGIEALARIIENRDGKCDGQIINIGNPENEASIRQLGEELLRQFEAHPLRDNFPPFA GFRDVESQSFYGTGYQDVSHRKPSVENARRLIDWTPTTELSETIGKTLDFFLREAMVEIAEKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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