Pseudomonas fluorescens AU12597, AA053_RS11305
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU12597 Contig_35, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGGATAATGTGTGGCCTGCGCTAAAACCGTTGCTTTGATGCTTTTCTAGTCGCAGCGTTTCGGCTAAGGTGGCGCCCCCCCGATTTGGAGCCCCCGATG TCGCGTCCTGCCTGGTCTTTATATGCCTATCAACTGATCGAGCCCGATGAACAGCTCGATTTGTTCGCCTGCCAGGAGGTACGGGTGCATCTGGTGACGC GTCAATTGGAGCTGGGAGGCACCATTGACCGTACGTTGTGCGGCTCGTTGCTGCCTGCGCAGCCGCGTTGGTCGGACGTCACGCGCAAGGTGTTTCAGGA CCACCGCCTCTGCCCGCTGTGCCGCGCAATCATTGAATCGCAGCGCCGCGGCACCGAGCCGATCTGGCCCGAATTGCGCTTTGAACTATGATCTACCTCG TCTGACTGTTTCGGCGAGGTACGCCGCCTCCAGAACCCGGCAGGCTGCGTGTACACTTTCCCCCTTTTGTCCCCCGTTGATTATGCGAAGGATGTTCCGG
|
|
| DNA Sequence for Gene |
>AA053_RS11305
ATGTTGTCGCGCCTACCTGCCGTCACCCGTTGTCTGTCAGTTGCCGCACTGTGTGTGGCAGGCCCTGTTGCTGCTCTTGAGTTTCCGTTGCCACCGCCCG GTGAAGACGTGGTGGGGCAGGTACAGGTCATCAAGGGCCGCTACGAAGACTCCTTCGCAGACTTGGGCAATGAGCATGAGCTGGGCTATTCGGAGATGAT CGCGGCCAACCCCGGCATCGATGCCTGGCTGCCGGTCAAAAAGCACCCCGATGGCACGCTGGTGGACACCGACATCGTGCTGCCAACCCAGTTCATCCTG CCACCCGGCAAGCGGGAAGGGATCGTGATCAACCTGGCCGAATACCGGTTGTATTACTTCCCCAAAGGTCAAAACAAGGTGTACACCTTTCCGCTGGGGA TTGGTCGTGAGGGTTGGGGGTCGCCGTTGGGCCAGACTCGAATCACCGCCAAGACGCCGAACCCGACCTGGACGCCCCCTGCGTCGATCAAGGCTGAACA TGCCCGCAATGGTGATCCGCTGCCCAATGTGGTGCCCGCGGGCCCGGACAACCCTCTGGGGCCTTTCAAGTTCACGCTGGGCATGCCGGGTTACCTGATC CATGGTTCCAATGCCAAGTTCGGTATTGGTACGGGCACGAGCCACGGCTGTTTCCGCATGCTGAACAAGAACGTCTTGCAAATGTCGCAGTTGGTGCCTG TGGGGACGCCCGTTCGCATTATCAACGAGCCCTACAAGATGGGCGTAAGTGGCGGCAAGGTGTATCTCGAAGTGCACGAGCCATTGAACGTCAAAGACGG GTCCCTGCTCGCCAAGAGCGACAAGTCGCATCTGACTCAAGAAGACAAAGAACAAAAGTGGGCTGGTTTCATGAACTTCGTGCTCAAGCACAAAGCACTG GAAAACAGCATTCAGATCGACAAGGAAAAAGCGTTCCCGGTGGTCGTGGCAGAAACGGGAATACCGGCTGAGATCGGAATCAGCACCGCTGTCGTACCGC AAGTGCCTGGTGTGCTTGAAGTGCCAGAAGGGCAATCGCTCGATTACGTGCAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGATCTGTTTAAAAGCCGCCGCAGTCACTGACTGCGGCGGCTTTTTAATGCCTGTTGAAAATACCTCAGGCAAAAAAAACCGACCCATAAAATGGGTCG GTTGGTAACAGCCCCGAAGGACTATTACTTGCGGCTTGCTTTTTCAAGCATGCGCAGAGCACGTTCGTTTGCTTCATCAGCAGTCTGTTGTGCTTTTTGA GCAGCAGCCAGCGCTTCGTCAGCTTTACGGTAGGCTTCGTCAGCACGAGCCTGGGAACGTGCTGCTGCATCTTCAGTTGCAGTCAGACGGGCTTCAGTTT CTTTAGATACGCTGCTGCAACCGGTAGCCAGAACTGCGGCCAATGCCAGAGCAGAGAATTTCAGAACGTTGTTCATCGTGTTCCCCTTCAAGGACTTTCT AATTGAAGCTGCTCCTTCAACATGAGGAAACAGCCGGCGTACATACTACCCATTACTTGTAGTAAGTAAACTGACCTAGCGCAAGAACCAAAAAAAATAA
|
|
| Amino Acid Sequence |
>transpeptidase
MLSRLPAVTRCLSVAALCVAGPVAALEFPLPPPGEDVVGQVQVIKGRYEDSFADLGNEHELGYSEMIAANPGIDAWLPVKKHPDGTLVDTDIVLPTQFIL PPGKREGIVINLAEYRLYYFPKGQNKVYTFPLGIGREGWGSPLGQTRITAKTPNPTWTPPASIKAEHARNGDPLPNVVPAGPDNPLGPFKFTLGMPGYLI HGSNAKFGIGTGTSHGCFRMLNKNVLQMSQLVPVGTPVRIINEPYKMGVSGGKVYLEVHEPLNVKDGSLLAKSDKSHLTQEDKEQKWAGFMNFVLKHKAL ENSIQIDKEKAFPVVVAETGIPAEIGISTAVVPQVPGVLEVPEGQSLDYVQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|