Pseudomonas fluorescens AU12597, AA053_RS15915
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF02743 | Cache domain | IPR033479 | Double Cache domain 1 | 53 | 286 | 9.0E-15 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 329 | 502 | 1.9E-61 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 327 | 502 | 3.3E-59 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 200 | 288 | 3.8E-17 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 345 | 503 | 4.79E-48 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 336 | 500 | 3.9E-52 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 341 | 500 | 9.95764E-66 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 340 | 498 | 1.4E-49 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 321 | 506 | 1.2E-70 |
| CDD | cd12914 | PDC1_DGC_like | - | - | 75 | 199 | 8.56229E-22 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 47 | 197 | 7.2E-27 |
| CDD | cd12915 | PDC2_DGC_like | - | - | 201 | 297 | 4.90635E-21 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 335 | 503 | 1.5E-54 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.