Pseudomonas fluorescens AU12597, AA053_RS15235
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU12597 Contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACACATTGGCAGCGGCCTATACAGCCGCGAAGTTGACTACCTGTGCAGTCAGGAATGGGCCCTGGACGCTCAGGACATCCTGTGGCGCCGCACCAAGC TGGGGTTGTTCACCACCGCCGAAGAACAGCAACACCTGGCCCACTACATGGCCAGCCTGAATCTCAAACACCGCAAGGTAGAAGCCGCTTAACTCTCCCT TTAACGCCCACCTCGATGTGGGCGTTTTTTTATCGCGACGCGCCCGAATCATTCGGATTTCCGAACGCGGTCCTTCATGCAAGTTCGGCTTTCCGGGCAA CCGCATGTTCACGCCTGCCTGCAACAAACCTATAACCCCATATAAATCAAAGTGTTAGCTTTATTAACAGGATCTGGCACGACTCATGCTCTACACTCTG GGCCGACTGCTTAAACAGCCTTAGCCTGTTGAGTTGTTCGAAGTACATAAAGGGTCCAGTGAACTGGCTCAATAAAAAAAACAATGTCGAGGAACCACCG
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| DNA Sequence for Gene |
>AA053_RS15235
ATGCGCATCGTCCCGCAACTTTTGGCCGCAGCCATTACTGCAGCCCTGATTAGCACTCCAGTTTTTGCAGCCGAATTGACCGGCACACTGAAGAAAATCA AAGAATCCGGCACCATCACCCTTGGGCATCGTGACTCCTCCATCCCGTTCTCCTACATCGCGGACGCTTCCGGTAAACCGGTGGGTTACTCCCACGATGT GCAATTGGCAATTGTCGAAGGCCTGAAAAAGCAGCTCGACATGCCGGACCTCAAGGTCAAGTACAACCTGGTCACCTCCCAGACCCGCATCCCGCTCGTA CAGAACGGCACCGTCGACGTTGAATGTGGCTCTACCACCAACAACACCGAACGCGCCCAGCAAGTCGACTTCTCGGTCGGCATCTTCGAAATCGGTACGC GTCTGCTGTCCAAAAAAGACTCGCCATACAAAGATTTCGCTGACCTGAAAGGCAAAAACGTCGTGACCACCGCCGGGACCACTTCCGAGCGCATTCTCAA GGCCATGAACGCCGACAAGCAGATGGGCATGAACGTGATCTCGGCAAAAGACCACGGTGAAGCGTTCAACATGCTTGAATCGGGCCGCGCCGTCGCATTC ATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGCCAAGAAGCCCACTGACTGGGCTGTAACCGGTACGCCCCAATCGTACGAAATCTACGGCT GCATGATGCGCAAAGGCGATCCTGACTTCAAAAAGGCCGTGGATGACGCCATCGTTTCTTATTACAAATCTGGTGATGTGAATAAGTCCTACTCCACGTG GTTCGAATCGCCAATTCCACCTAAAGGTCTCAACCTTTCGTTCCCGATGAGCGAAAAGGTTAAAGAGCTGATCGCTAATCCACATGACAAACCAGCACCA GAAGTAAAAATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCTGCCTGAACAGACTACCGGGCGTGAATAATCGCGCCCGGTAGCCTTGATCACCCGCTGTACTCGCTACTGACTGCATTAGAGAGCACTCGACCCGC CGGTTGTCGAGCGGGGAGCGTGTGCCTGACGATCGTGTCAGGTGAGAACGGATTCCCTGAAGCAAGTGCTTGTGACTAGAACCATCTGAGGGGAGACCCT GCATGAATTACAACTGGGACTGGACCGTGTTTTTCAAGTCCACCGGCGTAGGCAGCGAGACGTATCTCGACTGGTTTATTTCGGGCTTGGGCTGGACCAT CGCGATCGCTGTCGTCGCCTGGATCGTTGCCTTGATGCTGGGTTCGCTGCTGGGCGTGATGCGCACCCTGCCGAACCGCTTCATCGCCGGCATCGCCACC CTTTACGTTGAAATCTTCCGTAACGTACCGCTGCTGGTGCAGTTGTTCATCTGGTACTTCCTGGTGCCCGATCTGCTGCCGCCGGACTTGCAGGAGTGGT
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| Amino Acid Sequence |
>ABC transporter
MRIVPQLLAAAITAALISTPVFAAELTGTLKKIKESGTITLGHRDSSIPFSYIADASGKPVGYSHDVQLAIVEGLKKQLDMPDLKVKYNLVTSQTRIPLV QNGTVDVECGSTTNNTERAQQVDFSVGIFEIGTRLLSKKDSPYKDFADLKGKNVVTTAGTTSERILKAMNADKQMGMNVISAKDHGEAFNMLESGRAVAF MMDDALLAGEMAKAKKPTDWAVTGTPQSYEIYGCMMRKGDPDFKKAVDDAIVSYYKSGDVNKSYSTWFESPIPPKGLNLSFPMSEKVKELIANPHDKPAP EVKI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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