Pseudomonas fluorescens AU11122, AA047_RS16640 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11122 Contig_38, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGCGCTACCGTGAGTTGGCGCGCGGTGTTCACCCGGATCGCTTTGCTGATGCTTCCGAGCGGGAGCAGCGCATGGCGCTGGAGCAGTCCGCCAGCCTTA ACGAGGCCTATCAGACACTCAAAAGCCCATCCAGGCGCGCGCGTTATTTGCTCGAACTCAAGGGTAATGACGTGCCTCTGGAAGCAACGGTGCACGATCC TGAATTTTTGATGCAGCAGATGCAGTGGCGCGAAGAACTTGAAGACTTGCACGACACCGCCGACATGGCAGGTATTGCAGCTTTCAAGCGTCGACTGAAA GACGCTCAGCAAGCCTTGAACGACAGCTTCGCTGCTTGTTGGGATGATGTTGCGCAGCGTGAACAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCG ACAAGCTCACTTACGAAGTGCGCCAGCTAGAAGAGCGCCTCGACGATTAACTCCGTGCTTTTCCGATTGCACGCCTGATTACAGATAAGTCCTGATAACG
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| DNA Sequence for Gene |
>AA047_RS16640
|hscA
ATGGCCCTACTGCAGATCGCCGAACCCGGCCAAAGTCCTCAACCGCACCAGCGACGTCTGGCTGTGGGGATCGACTTGGGCACCACCAATTCGCTGGTTG CTGCGTTGCGCAGTGGCCTTTCCGAGCCTTTGGCTGACGCAAGTGGCAATGTCATTTTGCCCTCAGCCGTGCGTTATCACCCTGGCCGCGTAGAGGTGGG TGAATCAGCGCGCCTGGCGGCTTCTGCCGATCCGTTCAATACGGTGTTGTCGGTCAAGCGCCTGATGGGGCGTGGTCTGTCCGACGTCAAGCAACTGGGC GAGCAACTGCCTTACCGCTTTGTGGGCGGTGAGTCGCACATGCCGTTCATCGATACGGTCCAAGGGCCCAAAAGCCCGGTCGAAGTATCGGCGGAAATCC TCAAGGTATTGCGCGAGCGTGCCGAGAAAACACTGGGTGGTGAATTGGTCGGTGCCGTGATTACGGTGCCCGCTTATTTTGACGACGCTCAGCGTCAGGC GACCAAAGATGCGGCCAAGCTGGCTGGTCTTAATGTGTTGCGTTTGCTCAATGAACCGACTGCTGCTGCGGTGGCTTACGGTCTTGACCAGTCTGCTGAA GGTGTTGTCGCTATCTATGATCTGGGCGGCGGCACGTTTGATATTTCAATCCTGCGCCTGACCGGCGGTGTATTCGAAGTGTTGGCGACCGGCGGCGACA GCGCGCTGGGGGGTGACGATTTCGACCATGCGATCGCCAGTTGGATAGTCGAGCAGGCAGGGTTGTCGGCTGATCTGGACCCCGGCACTCAGCGTCAACT GCTGCAAAGCGCCTGCGCGGCCAAGGAAGCGCTGACGGATGCATCGAGCGTGACGGTTACGTTTGGACAGTGGTCTGCCGAGCTGACCCGCGAAAGGCTC GATGCGCTGATCGAGCCAATGGTCGCCCGCAGCCTCAAAGCCTGTCGCCGAGCCGTGCGCGACGCCAATATCGAAGTCGAAGATGTGCAGGCCGTGGTCA TGGTGGGTGGATCGACGCGCGTCCCGCGGGTGCGCGAGGCAGTCGCCGACATGTTTGGCCGTCAGCCGTTGACTGACATCGACCCGGATCAAGTGGTTGC CATTGGGGCAGCGATTCAGGCCGATACGCTCGCGGGCAACAAACGTGAGGGGGGGGAGTTGCTCCTGCTTGACGTGATCCCGTTGTCGCTCGGTCTTGAG ACCATGGGTGGCCTGATGGAGAAAGTCATTCCCCGCAACACCACGATTCCCGTCGCGCGAGCTCAGGATTTCACCACTTACAAAGATGGCCAGACGGCCA TGATGATCCACGTCCTGCAGGGTGAGCGCGAGCTGATCAGCGACTGCCGTTCGTTGGCGCGTTTCGAGTTGCGTGGCATACCGCCGATGGTCGCAGGTGC CGCGAAAATCCGCGTGACTTTCCAGGTGGATGCCGACGGTTTGCTCAGCGTGTCAGCCCGTGAAACGGGATCGGGCGTTGAAGCCAGTATTCAGGTCAAG CCGTCCTACGGCCTGACGGATGGTGAAATCGCCAAAATGCTCAAGGATTCGTTCCAGTACGCAGGTGACGACAAAGTGGCTCGCGTGTTGCGTGAGCAAC AAGTCGATGCGCAGCGCCTGATCGAAGCCGTGCAAGCCGCGCTGGAGGTGGACGGTGACCGCCTGCTTGATGCTGAAGAGCGCAAGGTGATCGAGCTGCA CATGCAGCAATTGTCCGAATTGTTAAAAGGCACCGATGGTTACGCCATTGAGCAGCAGACCAAGCGTCTGTCGCACGTGACCGATGCCTTTGCTGCCCGC CGTATGGACCTGACTGTCAAGGCGGCTCTGGCCGGGCGCAACCTGAATGAAATCGAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGATGCCGCAGATCATTTTTCTGCCACACGCCGAGCATTGCCCGGACGGTATGGTTGTTGAGGCCGAGACCGGTAAGTCAATCCTCGAAGTGGCGCATG ACAACCACATTGAGATCGAAAGCGCCTGCGGTGGCGTCTGCGCCTGTACCACTTGCCACTGCATCATTCGCGAAGGGTTTGATTCGCTGGAAGAAGCTGA CGAGCTCGAAGAAGACTACCTTGATCGCGCGTGGGGCCTGGAGGCACACTCGCGCCTGAGCTGTCAGGCCAAGGTCGGGACCGAAGACCTGACGGTCGAA ATCCCTAAGTATTCGCTTAATCATGCTGCCGAAGCGCCGCACTGATTCGATCGCTGCCGGGGTGCGCTGGCTGATTCGGGTCATTCCCTCTTTTCAGCCG CGCCAAGGTTCTGAGCGGTATAAGACTCTGCTTTTAAAGGAAGTGTCATGAGCCTTAAATGGGTTGATGTACAGGAAATCGCGATTCAGCTGGCTGAGGC
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| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGLSEPLADASGNVILPSAVRYHPGRVEVGESARLAASADPFNTVLSVKRLMGRGLSDVKQLG EQLPYRFVGGESHMPFIDTVQGPKSPVEVSAEILKVLRERAEKTLGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLDQSAE GVVAIYDLGGGTFDISILRLTGGVFEVLATGGDSALGGDDFDHAIASWIVEQAGLSADLDPGTQRQLLQSACAAKEALTDASSVTVTFGQWSAELTRERL DALIEPMVARSLKACRRAVRDANIEVEDVQAVVMVGGSTRVPRVREAVADMFGRQPLTDIDPDQVVAIGAAIQADTLAGNKREGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARAQDFTTYKDGQTAMMIHVLQGERELISDCRSLARFELRGIPPMVAGAAKIRVTFQVDADGLLSVSARETGSGVEASIQVK PSYGLTDGEIAKMLKDSFQYAGDDKVARVLREQQVDAQRLIEAVQAALEVDGDRLLDAEERKVIELHMQQLSELLKGTDGYAIEQQTKRLSHVTDAFAAR RMDLTVKAALAGRNLNEIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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