Pseudomonas fluorescens AU11122, AA047_RS07020

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU11122 Contig_34, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AAACCGGTGAGCAATACCACGAAAGTGACATTTCCCAATGCCTGCCAATTAATGCGCTGGCATTTCCATCCGATGGGCTTCGAAGCCACCATGGACGCCC CGCGCAGCATGATTGCCCGGCTGTTTGACCGGGCCAGCGGCGAGACCGTGATCGCCATCGCCGGTATCCCGTGCGCCACCGTCATGACCACCACCGAAGT GGCGCGCATCATTCAGTCCGTGGAAGACGAGCTTGAGAGCTTTGTCCCGCCACAAGCATGGCAAGAACTGGCGTGAGCCAAACCGTTTGCTGAGATGCTT TGGCGAACGTCCCGGTTCGCGATGTAGCCTTTTACTGCCCTCTCTGTTCACGTGTGCCGACATCCCGTCGGCAGCTGTCATGCATGAAATATCTACGTGA CGGTAGATTTAACTTCATGGCAACAACGAGAATCTATATCATTTACTTTTGTATCTGCAGGGAAGCTGATCGATCTTAATCACTTCATGCGGAAATCCCG
DNA Sequence for Gene
>AA047_RS07020
ATGCTGCGCACACCCTTTGCACCCTTGCGACTCACGCCGATCGCTGCTGCCCTGATCGGCGCCATGAGCGCCCCGGCCGCCCTGGCTGAATCGCCTGTCA ATACGCCCCTGACCCTCGACCCCACCGCGGTGTCCGCCGAAGCACCGCAGCACACTGCACTGCCCGCGGTGTACAGCGGCGGCCAGGTCGCACGCGGCGC AGAATTGGGTGTCTTGGGCAATCAGGACATCATGGATGTGCCGTTCACGATGGCGAGTTACACCTCACAGCTGATCGAAGACCAGCAGGCTGAAAGTCTG GGGGATGTACTGCTCAACGACGCTTCGGTGCGTCAGTCGTTCGGGTACGGTAATGCCTCGCAGATTTTTGTGATTCGCGGCTTGCCCCTCACAACGGACG ATGTCTCCTACAACGGGTTGTTCGGCGTCCTCCCTCGTCAGATGATTTCTTCTGACAGCCTTGAACGGGTTGAAGTTTTTAAAGGGCCGAACGCGTTTAT TAATGGCGTCACCCCCACAGGGTCAGGGGTTGGCGGTGGCATCAACCTGCAACCCAAACGCGCTGAGGACACGTCGACACGCCGTTTCACCACCGATATA TCCAATAACGGGCGCATCGGCGAGCATCTGGATCTGGGCCAGCGCTTTGGCGCTGAAAACCAGTTCGGGGTGCGCATGAACCTGGCACAACGCGAAGGCG ACACCGCCATCGATAATGAAAACCAGCGCACCAAGCTGTTTGCCCTTGGCTTGGATTACCGCGGCGATCGGCTGCGGGTGTCTACCGACTTCGGTTATCA GAAGCAACGCATCAATGGCAATCGCAACACCGTGTATTTAGGGTCTGCGCTTACCGATATCCCCCATGCCCCCGATGCTGATCACAACTACAGCCAGAAA TGGACGTCCACGGACCTGGAAGACACCTTCGGCATGGCCCGCGCCGAGTACGATCTCTCCGACCACTGGACCGCCTATGCCGCCGCTGGCGCCAAGCACA CCCGCGAAGTAGGGAATTACTCCACGCCCACACTGCTCAACAGCGCTGGCGCAACCACAGCATCGAACATGTTTGTGGCCCACGACGAGGACAACCGCAG TGCCATGGCCGGGCTGCGGGGCATGTTCCAGACCGGCCCGGTGAGTCATCAGGTCAATCTGGGGGTGAGCGGGATCTGGACCCAACAGCGCTCGGCCTAT GACTTGAGCGGCACGTTCAGCAATAACCTATATGACACCGTTGACGTACCCCAGCCCGCGCCAGGCAAGTACGTGGGTGGCGATATCAACGATCCGGGGA TTGTCGGCAAAACCATTAACCGCAGCGTGGCGATTTCCGACACGTTGGGCTTTGTTGATGACCGTGTGTTGCTGACCTATGGCCTGCGCAAGCAGACGCT CAAAGTCGATGGCTGGAACTATCAGGGCAATCGTTCTGCCGCGTACGACGAATCCATCACCACGCCGGTATATGGCATTGTGCTCAAGCCCTGGGAAAAC GTGTCCGTGTACGCCAACCGCATCGAAGGTTTGGCCCAAGGCCCGACAGCCCCCGCTTCCGCGGGCGGCATGCCAGTGACAAACGCCGGGGAAGTCTTTG CCCCGGCGCGCTCAAAGCAGGTCGAAGCGGGGATCAAATACGACAAAGGCACCTTCGGCGCCAGCCTGGGCGTGTACCGTATCGAAAAGCCTTCCGATGG CTACACCAACGCCGATGGCACCTACGTACGCCAAGGCACCCAGCGCAACCGTGGCGTAGAACTGAACCTCTATGGCGAACCGATAGATGGCTTGCGTCTG CTGGCGGGCGCCACCCTGATGGACACGGCGCTCAAAGGTACTAAAAACGGCGCAAATGATGGCAACCGGGCCATCGGTGTGCCGAAGTTTCAATACAACC TGGGAGCAGACTGGGACGTGCCGGGTTTGCAAGGCGTGGCGCTCAATGCCCGTATGCTGCGCACCGGCGGCCAATACGCCAATGAGGCCAACACGCTCAG CATCCCTGCATGGAACCGCTTTGACCTTGGCGCCCGTTACAGCTTCGACGTGGAGCAGCGTGCCGTGACCCTGCGGGCCAATCTGGAAAATGTCGCCAAT ACCCGTTATTGGGCTTCCGCCAACGGTGGTTACCTGAGCCAGGGCGAGCCACGCTTGCTGAAAGTCTCGGCCACAGTGGACTTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCGATAGGCGCACTGCAAGAATTGCACTTGCAGTGCGCAGGTGAGGGTCAGAGTATCCGGTACAGCAGGCGCTCGATCCGCACGCGGCTGACGCGGCGC AGGAACTTGGCGACGGCAGGCGGGTAATCGGTCAGGGTTTCGAGCTGCCTGAACGTCTCAATGCGCGTGGTGTGGGCAAAGATCGCGTCCAGTTCTTTGC GGCGCGGTTCCAGCAACTCGCGGCGCGGGTCATCGATCAACAAGCCGTTTTCAAGGTCCAGCCTGAACGCGCGCGGGTTCAAGTTGTTGCCTGTCAGCAA GGTGTAACGATCGTCCACCCACATGCCCTTGAGGTGGTAGGTGTTGTCGCCATCGCGCCACAGGTGCAGGTTCAGCAGGCCACTGTCGATCATCGCCTGG TGGCTCTTGGCAAAGCGGCGCAAGCTCAGTTCATACAAGTACGGCAACGCCGCAATCACCTTGAAGGGCTCGCTGGGCGGGATGTAAAAGTCGTTGGCCG
Amino Acid Sequence
>TonB-dependent receptor
MLRTPFAPLRLTPIAAALIGAMSAPAALAESPVNTPLTLDPTAVSAEAPQHTALPAVYSGGQVARGAELGVLGNQDIMDVPFTMASYTSQLIEDQQAESL GDVLLNDASVRQSFGYGNASQIFVIRGLPLTTDDVSYNGLFGVLPRQMISSDSLERVEVFKGPNAFINGVTPTGSGVGGGINLQPKRAEDTSTRRFTTDI SNNGRIGEHLDLGQRFGAENQFGVRMNLAQREGDTAIDNENQRTKLFALGLDYRGDRLRVSTDFGYQKQRINGNRNTVYLGSALTDIPHAPDADHNYSQK WTSTDLEDTFGMARAEYDLSDHWTAYAAAGAKHTREVGNYSTPTLLNSAGATTASNMFVAHDEDNRSAMAGLRGMFQTGPVSHQVNLGVSGIWTQQRSAY DLSGTFSNNLYDTVDVPQPAPGKYVGGDINDPGIVGKTINRSVAISDTLGFVDDRVLLTYGLRKQTLKVDGWNYQGNRSAAYDESITTPVYGIVLKPWEN VSVYANRIEGLAQGPTAPASAGGMPVTNAGEVFAPARSKQVEAGIKYDKGTFGASLGVYRIEKPSDGYTNADGTYVRQGTQRNRGVELNLYGEPIDGLRL LAGATLMDTALKGTKNGANDGNRAIGVPKFQYNLGADWDVPGLQGVALNARMLRTGGQYANEANTLSIPAWNRFDLGARYSFDVEQRAVTLRANLENVAN TRYWASANGGYLSQGEPRLLKVSATVDF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site