Pseudomonas fluorescens AU11122, AA047_RS20145

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU11122 Contig_32, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACGCCTCACCGGAAGCTGCGGCGGGCGGCGCGATTGGCCTGGTACAGGACGGCGACAAAGTCCTGATCGACATCCCGAACCGCTCGATCAACTTGTTGGT CAGCGACGAAGAACTGGCGGCGCGCCGGGTCGAGCAGGACAAAAAAGGCTGGAAACCGGTCGAAGTGCGTCCACGCAAAGTCACCACGGCATTGAAGGCA TACGCCTTGCTCGCCACCAGCGCCGACAAGGGCGCGGTACGTGACAAAGCCTTGCTGGACAAACTGGTGCCGTAACCCACCTCGCCCCCCAAAATCCCGG CCATGTGCCGGGATTTTTAATGAGCGGGCAAAAGATATTCACCCTTGAAACCAAAAGCATCCGGAAAAGATGTGTCCTGGCTGGCATGCTCTGGATTCAA AGCTCATTTGCAATGCTTTATTTGAATTTCAGGAATCCCCCTACAGCCCATTAGCCACTACTGCAATACAGTCAGTGCTCAATTAAACGGGGATGCTGAA
DNA Sequence for Gene
>AA047_RS20145
ATGGCTAATCATGGCTACATGTCAATTACAGGAAGAAAACAAGGCCTAATATCTTCCGGCTGTTCGACCCAAGACTCTATAGGCAATAAATGTCAAATGG GCCACGCTGACGAAATCATGGTGTTAGCGTATTCACATGACATGGTGGCAGGCAGTGACGGGACAATTACTGGCGGTCGCGGACAACACAAACCTGTCGT TATTACAAAGAATATAGATAAGTCTTCGCCACTGATCGCTGCAGCACTTCACGATGGGGAGGAAGTCGAATGCATCATTGATTTTTATAGAACGTCTACA GTGGGCAGCCAAGAAAAATACTTCAACGTTCGCCTGTCTGGTGCACGCATTGCTTACATGAACATTCAAGTACCCCATGCTATTCATATGACAGATGGCC AGCCGCAAGAAATCGTTGCCATTCGTTATCGGGATATTACATGGACACACATCCCGGCTGGAACGAGTGCACATAGCTCATGGATAAACGAGATATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACGACCAACAGTGTGACATCCACGATGTCACAAAAGCGGCCTCAGACCTGATGTCATTGGGTTGTTCAGCGACAGGAACTTTTCTCCCTGACGGTGTCAT GCAGCTCACCTTCAGCTCGGCAATTGCAAATTACCTAAACAACGTCATTCGCGATGTCAATGACAGTGTTATCAGCGCCTGGGAAGGCATGCAGAAACTC AAAAGTGAATACGATGAATTAGCCAACAAAATAATATTCTATGCAAAAAACGGAATAGGCATTGCAGGGGGGTGCTATGCAAGTAAAAACAGGCGCCCAA TCAATAGTAAGCACTCGGGGATTGGGTTTTGCATATGGAGGTCCGATGATCATGCACGGCCTTAATAACATATATGAAGGCGCGACCAATATTTACAATG GAAATAATGAAGCCGTAGGCTTTATCAGACAGGGCTACAGACAATTCTACAAAGATGCCTACCAAGGTGACATGGCGTACTACTCTGCCGATTTATTGTT
Amino Acid Sequence
>type VI secretion system protein
MANHGYMSITGRKQGLISSGCSTQDSIGNKCQMGHADEIMVLAYSHDMVAGSDGTITGGRGQHKPVVITKNIDKSSPLIAAALHDGEEVECIIDFYRTST VGSQEKYFNVRLSGARIAYMNIQVPHAIHMTDGQPQEIVAIRYRDITWTHIPAGTSAHSSWINEI
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site