Pseudomonas fluorescens AU11122, AA047_RS13110

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU11122 Contig_16, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGAGGTAATGCTTAAGGTGCTGTATGGCTTGAAGAATTTTGAGGGCAAATCGAAATTCAAGACCTGGCTATATAGCATCACCTACAACGAATGCATTACG CAGTATCGGAAGGAACGGCGAAAGCGTCGCTTGATGGACGCATTGAGTATTGACCCCCTTGAGGAAGCGTCTGAAGAAAAGACGCCGAAACCTGAGGAAA AGGGCGGACTCGATCGCTGGCTGGTGCATGTGAACCCGATCGACCGGGAGATTCTGGTGCTGCGATTTGTCGCAGAACTGGAATTTCAGGAAATCGCGGA CATAATGCATATGGGTTTGAGTGCGACGAAAATGCGCTACAAGCGTGCTCTTGATAAATTGCGTGAGAAATTTGCAGGCATTGCTGAAACTTAGTTCAGC GCAAATAGCTCTACGTGTAGGTAAGTTCTGATAGACTTGCCGCCGAGTTGTCCCCCGGTATGTGGGACTGCTTTACAATCACCAGATGGGGATTTAACGG
DNA Sequence for Gene
>AA047_RS13110
ATGAAACTGAAAAACACCTTGGGCATTGCCATTGGTTCCTTTGTAGCCGCAACTTCGTTCGGTGCCCTGGCACAAGGCCAAGGCGCGGTCGAGGGTGAAC TGTTCTACAAAAAACAGTACAACGACAGCGTCAAGCACGTAGAAGACGGTTACAACCCAGGCGCATCGATCGGTTACTTCCTGACCGACGACGTCTCGTT GAACCTGACCTACGACAAGACCAACCACACCCGTTCGAACGACGGCACTGGCCACCAGAAAATCAAAGGCGACAACTTTGGTCTGAACGCTCAGTACCAC TTCGGCACCGTTGGTGACGCTCTGCGTCCTTACGTTTCCGGTGGTGTTGCTCACAAGAGCATGACCAACGTAGAAGCTGACGGCCACAGCGGTCGTGACC AGTCTACTTTCCTGACTGCTGGCGCTGGTGTTAAGTGGTACATCACTGACAACCTGTTCGCCCGTGCAGGCGTTGAAGCTGACTACAAACTGGACAACGG CAAGTGGGACTACGCGCCTACTGTTGGCCTGGGTGTAAACTTCGGTGGCAACGGCGGTAAAGTAGCTCCTGCTCCAGTTCCAGCTCCAGCACCAATCGCT GAGCCAGAACCAGAAGCTCCAATCGCTGAAGTGGTTAAGGTTGAGCTGGACGTTAAGTTCGACTTCGACAAGTCGGTTGTTAAATCGCAGTACATGCCTG ACATCCGCAACGTTGCTGATTTCATGAAGCAGTACCCTGCGACCACCACGACTGTTGCTGGTTACACTGACAGCGTAGGTCCAGACGCCTACAACCAAAA ACTGTCCGAGCGTCGTGCTAACGCCGTTCGTGCAGCTCTGGTTAACGACGGTGTTGAATCCGGTCGCGTAAACGCAGTGGGTTACGGCGAAGCCAACCCA GTTGCTTCGAACGCAACTGATGAAGGCCGTGCTCTGAACCGTCGCGTAGAAGCTACCGTTCAAGCAGAAGCTAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTATTAGCTAGCCTGTTCAGAAAAGCCCGGCTCAGGCCGGGCTTTTCTTTGTCTGCGATTTAGTCCCGATGTCTCAAGCCGGGAAGGCCTGAAACGGCGT CCCACACTTCCCTCGCGTCTTACCGCTCGGCACGGCTATAATCGCGCTCACTTTCAGCCGCCTTCCGAGACCATCGAGCCCATGTATAACCTGGCCCGCC AGTTGCTCTTCAAACTTTCCCCTGAAACCTCGCATGATCTGTCTCTGGATTTGATCGGAGCGGGCGGCCGTTTGGGGCTGAACAGTTTGCTGTGCAAGGC GCCAGCCAAGCTGCCCGTTAGCGTCATGGGGCTTGAGTTCCCTAATCCGGTAGGGTTGGCCGCAGGCCTGGATAAAAACGGGGCGGCGATTGATGGATTT GCCCAATTGGGGTTCGGGTTTGTGGAGATCGGCACCGTGACGCCGCGCCCTCAGCCCGGTAATCCCAAGCCGCGGATTTTTCGCTTGCCTGAAGCGCAGG
Amino Acid Sequence
>porin
MKLKNTLGIAIGSFVAATSFGALAQGQGAVEGELFYKKQYNDSVKHVEDGYNPGASIGYFLTDDVSLNLTYDKTNHTRSNDGTGHQKIKGDNFGLNAQYH FGTVGDALRPYVSGGVAHKSMTNVEADGHSGRDQSTFLTAGAGVKWYITDNLFARAGVEADYKLDNGKWDYAPTVGLGVNFGGNGGKVAPAPVPAPAPIA EPEPEAPIAEVVKVELDVKFDFDKSVVKSQYMPDIRNVADFMKQYPATTTTVAGYTDSVGPDAYNQKLSERRANAVRAALVNDGVESGRVNAVGYGEANP VASNATDEGRALNRRVEATVQAEAK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site