Strain | Pseudomonas fluorescens strain AU2390 Contig_80, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CGCTCGGCAGCCTGCTGGGCATTTTGCTGCACCGGGAACAGATCCGGCTCCTGACTCCAGTACCAGCCGAGCCCCAGGCACACCAGCACATACACACCCA CCAGGGTGGCAATGGAGCGGCTCAGCAAGATACTTTTGAAATAGCCACGCGGCTCTGTCCTGGTCTCCTTGACCGACTCGCGGGCACTGCCCTCACGTTT TTTCCAGTCCAGCATGGCTATATCCTTTCGATTACTGAATTCAACGGTTCGACCACAACCCTAACCCATCGTGCCTTATATGCCTGTTTTTAATCGCCTG CCGGTTGATCTGCAACAAGGCGCTGGCAACAGGCGGCGGCCACTATAAACCACGCTCGCGCCCCTCACAGAAGGATCTCAAAGCCTAAATGTAACCGGCC AACGTTAATTTCGTGTGAGGGCTCGTGCATTTCCAAAGAGCTGCTAGCATAGAGCCACTAGTCGAACCTCAGCATGCCCCACTCACGAAGCAGTCTGGAT
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DNA Sequence for Gene |
>AA041_RS03365
ATGACCGAGCAAGAAGACCCGAACCGCGAGCGCCTCAAGAACCACTTTGCCCAGCGGGTCATCCATCAGGCACGTCAAATTCTTGAGATCTGGCAACGTT TACAGGGCAATGAATGGGCCCCCTCAGACCTCGCGGAACTCAGCGACGCCAACCTGCGCCTGCTGCGGTTTGCCGCACGCTTCGAGCAGCCCGAGCATTC GCAACTGGCCCGCGCCATCAGCCAGGCCTTGCAGCAGGTCGAGGCCAACCGCGGGCGCCTGAGCAGTACGTTGATTACAGAGCTCAATCGCCTGATGCAG CGCTTGTCGCGTACCGGTCTGCGCCACGGCGACCAGCTGGATCACACCTTTCTGCCACCGCTGCGCAAGCCGGTGTATATCCTGCTTCAGGACCATGACC GGGCCGAGCGACTGGCCAAGCAACTGGATTTTTTCGGCCTGGGCGCGCAATCGCTGCCCAGCGTGAATGCCTTTCGCAGCGCCATGGCCGAACGCCTGCC CTGCGCGATCGTGATGGACGTGGATTTCAGTGGCACCAGCAATGGCCTGCTGCTGGCCGCCGAAGCGCAGGAGGGGCTGGAGCAAAAATTGCCGCTGCTG TTTTTCAGCCTGCATGAAACCGACACCCCCACCCGACTGGCCGCCGTGCGCGCGGGCGGGCAGGAGTTCCTGACCGGCACCCTCGAAGCCTCCAGCCTGA TGGAGAAAATCGAGGTACTGACCTGCGTCGCGCAGTACGAACCGTACAAAGTGCTGATCATTGATGACTCCCGGGCTCAGGCATTGCACACCGAACGGCT GCTCAACAGCGCCGGGATCGTGACCCGCACCCTGATCGAGCCGATTCAGGCCATGGCCGAACTGGCCGACTTCCAGCCCGACCTGATCATCCTCGACATG TACATGCCCGCCTGCACCGGCACCGAGCTGGCCAAGGTGATCCGCCACAATGATCGCTACGTCAGCGTGCCGATCATTTACCTGTCGGCCGAAGATGACC TGGACAAGCAACTGGACGCCATGAGCGAAGGCGGCGACGACTTCCTGACCAAGCCGATCAAACCCCGGCACCTGATTACCACCGTGCGCAACCGCGCCGC CCGGGCACGGCACTTAAAGGCGCGGATGGTGCGCGACAGCCTGACCGGCCTGTACAACCACACGCATATTCTGCAACTGCTCGAAGACTGCACCTTCCGC GCCCGCCGCGAAAGTCGCTCGCTGAGCTTTGCCATGATCGACATTGACCATTTCAAGCGGGTCAACGACTCCTACGGCCACCCCATGGGCGACCGGGTGA TCAAAAGCCTGGCGCTGTTCCTCAAACAGCGTCTGCGCAAGACCGACTTCATCGGGCGCTATGGCGGCGAAGAGTTTGCCATTGTGATGCCTGACACCGA TCAGGAAGCGGCCCACGCGGTGTTGAACACCATCCGCGAGCGCTTCTCGGAGATTCATTACCCGGCCCAGCCCACCGATTTATGCTGCACCTTCAGCGCG GGCGTGGTGGAACTCAAAGAGGGCACAGACGGCCTGATCATGGCGTCTCAGGCAGACGAAGCGCTGTACCGCGCCAAGCACAACGGGCGCAACCGGATCG AGCGTTTTCACCCGACAAGGCAAATTGCCACTATTTCGGTCAAATTGCCGAATCCCGTCACATCGCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CGCACGTGCAATAACTTCAGCCGCTTCTCATTGCGTCGTAGGCAAAATCCCAGATGCGCCTGAAGCTGCTTACCAACCTCAACACCCTGTTGCTGGTCGC CGTGTGCCTCGCCCTCGGCGCCACCCTGGCGTGGTCGCAACACGCGCTTGAACGGCCGTTTCAACTGATGGAACGCTACTTGAGCCTGTCCCAGCAGTTC CAGAACCAAGTGGCGCGCAATATTGAAGATTACCTGGCCAGTGGCGACGCCCTGCGCCTGAGCGATGCCACGACCGCGCTCAACACGCTGAAAGCCGAAC TGACCCCGCTCCCGGTTGCGCTGACCGAGGCCTTGCGCCCCAGCCTCGAACGCCTGAGCACATACAGTGGCAACGAACTGCTGGCCGCCGGCAAACTGGC CGGTGACCCGCAAGCGTTGCTGTTGCAGGCCGAACGGGAGCTGGGCGCCACGCTGGAGCAACTCAGCCAGTATGCCAATCAAGCCAGCGGCCCCGACGCC
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Amino Acid Sequence |
>diguanylate cyclase
MTEQEDPNRERLKNHFAQRVIHQARQILEIWQRLQGNEWAPSDLAELSDANLRLLRFAARFEQPEHSQLARAISQALQQVEANRGRLSSTLITELNRLMQ RLSRTGLRHGDQLDHTFLPPLRKPVYILLQDHDRAERLAKQLDFFGLGAQSLPSVNAFRSAMAERLPCAIVMDVDFSGTSNGLLLAAEAQEGLEQKLPLL FFSLHETDTPTRLAAVRAGGQEFLTGTLEASSLMEKIEVLTCVAQYEPYKVLIIDDSRAQALHTERLLNSAGIVTRTLIEPIQAMAELADFQPDLIILDM YMPACTGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPIKPRHLITTVRNRAARARHLKARMVRDSLTGLYNHTHILQLLEDCTFR ARRESRSLSFAMIDIDHFKRVNDSYGHPMGDRVIKSLALFLKQRLRKTDFIGRYGGEEFAIVMPDTDQEAAHAVLNTIRERFSEIHYPAQPTDLCCTFSA GVVELKEGTDGLIMASQADEALYRAKHNGRNRIERFHPTRQIATISVKLPNPVTSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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