Pseudomonas fluorescens AU2390, AA041_RS03360
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU2390 Contig_80, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCTTTGCCATGATCGACATTGACCATTTCAAGCGGGTCAACGACTCCTACGGCCACCCCATGGGCGACCGGGTGATCAAAAGCCTGGCGCTGTTCCTCA AACAGCGTCTGCGCAAGACCGACTTCATCGGGCGCTATGGCGGCGAAGAGTTTGCCATTGTGATGCCTGACACCGATCAGGAAGCGGCCCACGCGGTGTT GAACACCATCCGCGAGCGCTTCTCGGAGATTCATTACCCGGCCCAGCCCACCGATTTATGCTGCACCTTCAGCGCGGGCGTGGTGGAACTCAAAGAGGGC ACAGACGGCCTGATCATGGCGTCTCAGGCAGACGAAGCGCTGTACCGCGCCAAGCACAACGGGCGCAACCGGATCGAGCGTTTTCACCCGACAAGGCAAA TTGCCACTATTTCGGTCAAATTGCCGAATCCCGTCACATCGCTGTAACGCACGTGCAATAACTTCAGCCGCTTCTCATTGCGTCGTAGGCAAAATCCCAG
|
|
| DNA Sequence for Gene |
>AA041_RS03360
ATGCGCCTGAAGCTGCTTACCAACCTCAACACCCTGTTGCTGGTCGCCGTGTGCCTCGCCCTCGGCGCCACCCTGGCGTGGTCGCAACACGCGCTTGAAC GGCCGTTTCAACTGATGGAACGCTACTTGAGCCTGTCCCAGCAGTTCCAGAACCAAGTGGCGCGCAATATTGAAGATTACCTGGCCAGTGGCGACGCCCT GCGCCTGAGCGATGCCACGACCGCGCTCAACACGCTGAAAGCCGAACTGACCCCGCTCCCGGTTGCGCTGACCGAGGCCTTGCGCCCCAGCCTCGAACGC CTGAGCACATACAGTGGCAACGAACTGCTGGCCGCCGGCAAACTGGCCGGTGACCCGCAAGCGTTGCTGTTGCAGGCCGAACGGGAGCTGGGCGCCACGC TGGAGCAACTCAGCCAGTATGCCAATCAAGCCAGCGGCCCCGACGCCCACGCCTATCTGGTGCCGCTGCTCAATGCCTCCCAACACTTGGCAAAACTCTC TTTAAGCCGCGACAAACTGGTCAGTAGCGGGCGCAGTGAGCTGGCGGCGGACGTGGCGCGCGAGCTGGACAACATGCGTGCGCAAGCGCAGACCATCGAG GCGCTGCCTTTGCTGGGGGTCAGCGCCAACAGCGCCTCGGCCAGTGACGATTTCGCGGCACTGATGGGCCTTGAGTCGGAACAGACGGGCGCGACCGAAG ACGCTGGCATCCCCCTCAAACGTGAACTCAACAACCTGCTGAGCCGCTACCCCGCCGAGTTGCAACGCACCCGCAGCCAGATCGAACAGCGCGCTCAACT GGCTGACGCCACGCATGAAAAGCTGGGCGCAGTGCAACAGGCCATCGCCGGACTGGAGCCGGCAGTGCGCGCTGAACACGGGCAGATTCAAAGCGAAGTG CGGCTGATTCAGGGCGCGATGATTGGCCTGATTCTGCTGATCGCACTGCTGATCGACACGTTGCAGCGCAGACTGGCCAACGTGTTGACCCGCCTGGTGC CGATGCTGTCGACCTGGGCACAAGGGGATTTCAGCCGCGACATTCAGTTGGGCAAAACCAATCGCGAACTGCACGACATTCAGGCCTCGCTCAATCGCCT GCGCAATTACTTGGTCAATCTGGTGGGCACCTTGCGCGTCAACGCCGAACAGGTGGCCGGCAGCAGTGAGGCGCTGGCCGAGGTGAGCAACGGTTTGCAC AGCGGCGCCGAGCGGCAGGCAGGCGATACGGCGCAAATCCGCGACGCCCTGGGCGAATTGGAAGCGACCATTTCGCAAGTGGCAGGCGACGCCAGTCAGG CGGCCGATGCCAGCCGCAGTGCCGGGGTGGCGGTTGCGCAAGGCCAACGAGTCATTGGCCAAAGTTTGACCGGGCTGCATGCACTGGTGGGTGAAGTGCA AGGCAACGCGCAAATGATCGAGCAACTGGCCGAAGAGTCGGCCACCATCGGTGGCGTGCTGACGGTGATTCGCGCCATCGCCGATCAGACCAACTTACTG GCGCTCAACGCCGCCATTGAAGCGGCCCGTGCCGGTGAAATGGGACGCGGGTTTGCAGTGGTCGCCGAAGAGGTGCGCACGCTTGCCCAACGTACAGCAG GGGCGACCGGCGAAATTCAAACCCTGATCGGCGGGCTGCAAACGGCCGCGCGCCAGTCCGTCGAAGGCATGCGCGCCCAAGTTGTACATGCCCGGGACAC CGCCCGGCAGGCGCAAGCCGCCGATGGCGCGCTGGATGAAATCGTCGGGGCGATAGCCACCATCTCCGACACCGCCATCCGCATTGCCGACGTCACCGCT CAACAAAGCGGCGCGGTCAGTGAAATACGTGATCACAGTGAACGCATTCATCAGTTGGGTGACGACAATTTGCAACGCATTAGCCAGGGTCGCCAGCAAG GTGAGCGCTTACTGGTGTTGGGGGGCGAGTTGAATGCCGCGGTGCAGGCGTTTCGGGTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TACCGGGCGCGCGGATGGTTGCGATACCGCCGCTCCCCGTCAACGGTCAGCCCCCCTCGGCACAGCGTTTCTCACTCCGCTATCATGCGCGCACGTTTGA TTAGCGAGATCACTATGCGCCGCCTGTTTTTGCTTTTGTGTTTACTCGTCGCCGTGCCCGCCATGGGCGCGGGACTGTTGGACAACCGCCCCAGCGCTAC GCTGGGCGCCGTGAATAACAGCCGCGATTTTCTGCCGGTCAGCGAGGCGTTCAAGCTCAACCTGATCGAAAGCACGCCCACGAACATCAAGCTGCGTTTT GTGCCGACCGACGGTTACTACCTGTACCAGCACCGCTTTGCGTTCAAAACCGACCCCGCCGATATCACCTTGGGCCCGGTGCAACTGCCGCCCGGCGAAC CCAAGCATGATGAGTACTTTGGCGATGTGCAGGTGTATCACGGCATTGTCGACGTGGACGTGCCGCGTCCGGCCGATGCTCGACGCGCCTTCACGCTTGT
|
|
| Amino Acid Sequence |
>chemotaxis protein
MRLKLLTNLNTLLLVAVCLALGATLAWSQHALERPFQLMERYLSLSQQFQNQVARNIEDYLASGDALRLSDATTALNTLKAELTPLPVALTEALRPSLER LSTYSGNELLAAGKLAGDPQALLLQAERELGATLEQLSQYANQASGPDAHAYLVPLLNASQHLAKLSLSRDKLVSSGRSELAADVARELDNMRAQAQTIE ALPLLGVSANSASASDDFAALMGLESEQTGATEDAGIPLKRELNNLLSRYPAELQRTRSQIEQRAQLADATHEKLGAVQQAIAGLEPAVRAEHGQIQSEV RLIQGAMIGLILLIALLIDTLQRRLANVLTRLVPMLSTWAQGDFSRDIQLGKTNRELHDIQASLNRLRNYLVNLVGTLRVNAEQVAGSSEALAEVSNGLH SGAERQAGDTAQIRDALGELEATISQVAGDASQAADASRSAGVAVAQGQRVIGQSLTGLHALVGEVQGNAQMIEQLAEESATIGGVLTVIRAIADQTNLL ALNAAIEAARAGEMGRGFAVVAEEVRTLAQRTAGATGEIQTLIGGLQTAARQSVEGMRAQVVHARDTARQAQAADGALDEIVGAIATISDTAIRIADVTA QQSGAVSEIRDHSERIHQLGDDNLQRISQGRQQGERLLVLGGELNAAVQAFRV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|