Pseudomonas fluorescens AU2390, AA041_RS07640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU2390 Contig_76, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCCGCGACCCGGCGGGCTTCAAGGGGCCAGCCCTGTTGCAGAACATTCTGGAAAGCGGCCTGCGCTTTGGCGAGATGGATATTTTCCACCGCCACGAA AGCATGGCCGGCAATGGCGAAGTGCTGTTTTCGATGGCCAACGCTGTGAAGCCGGGTGTATTCGATCTGGACGATATCGACCTGTTCAGTACGCCTGCCG TGAGTTTCTTCCTGGGGCTGCCGGGGCCGCGTCATCCCAAGCAGGCGTTTGATGTGATGGTGGCCGCGGCGCGCAAGCTGTCGCAGGAACTGAACGGCGA GCTCAAAGATGACCAGCGCAGCGTGTTGACGGCGCAAACCATCGAGCATTACCGCCAGCGCATCGTTGAATTTGAACGTCGCGCATTGACTCAAAAACGC TAAGCCCTGTGGGAGTCAGCCTGTTTGCTCCCACTCCAGCGCGAACGAATTAACTCAAGAGCAGCCTCGGCTGCTCTTTTGCATTGTGAGAGAACACCCC
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| DNA Sequence for Gene |
>AA041_RS07640
ATGACCGCCGCCCATGACCGAATCCTAGCGCTGCGCGCTGAACTGGATCAGCACAACTATCGCTACCACGTGCTCGACGAGCCGAGCATCCCGGACGCCG AATACGATCGTCTGCTCCATGAGCTCAAAGCGCTGGAAGCCGAGCATCCCGAGTGGGTCACGCCGGACTCCCCGACCCAGCGGGTGGGCAGCGCTGCGTT GTCGGCCTTCACGCAGGTCCGCCATGAAGTGCCGATGCTGAGTTTGGGCAACGCCTTCGATGAGGCGGACATGCGCGAGTTCGACCGCCGGGTCAATGAA GGGCTGGATTTGCCCTCCGGCGACCTGTTTGGTGGCGGTGCTGAGGTCGAATACAGCTGCGAGCCCAAGCTGGATGGCCTCGCGGTCAGTCTGTTGTACC GGGACGGGCATTTGGTGCGCGGTGCCACGCGAGGTGATGGCGCCACGGGTGAAGACATCAGCGTCAACGTGCGGACCGTGCGCAACATCCCGCTCAAGCT GCATGGCAGTGGCTGGCCCGCCGTGCTGGAGGTGCGGGGTGAAGTGTTTATGTCCAAGGCCGGGTTTGAGCGCCTGAACGAAACCCAAATGGCGGCAGGC GGTAAAACCTTCGCGAACCCGCGTAACGCGGCGGCGGGCAGCCTGCGGCAGCTCGACTCGAAGATCACCGCCAGCCGTCCGCTGGAATTTTGCTGTTACG GCTTGGGCCAGGTGTCTGAAGAATTTGCTGACACGCACATCGGTAATCTTAAGCAGTTGCAAAAATGGGGCATGCCCATCAGTCATGAGCTGAAGTTGGC CAAGGGCATTGCCGAGTGTCTTGAGTATTACCGTGACATCGGTGAGCGGCGCGCTTCACTGCCGTATGAAATCGATGGGGTGGTGTTCAAGGTCAACAGC CTGGCCTCGCAGCGTGAGCTGGGGTTTCGTGCCCGCGAACCGCGTTGGGCCATCGCCCATAAATTCCCGGCGATGGAAGAGCTGACCGAGCTGCTGGATG TGGAGTTTCAGGTGGGCCGAACCGGCGCGGTGACCCCGGTGGCGCGTTTGAAACCGGTGAAGGTGGCGGGCGTGACGGTCTCCAACGCCACGTTGCACAA CATGGACGAAGTGGCGCGACTGGGGTTGATGATCGGCGATACCGTGATCATTCGCCGTGCTGGCGATGTGATCCCGCAGGTGGTGCAAGTGGTGCTGGAT CGCCGTCCGGAACATGCCCGCCCGGTGCACATTCCGCACAACTGCCCGGTGTGCGGCTCGCATGTCGAGCGCACGCAACTGATCAAGCGCAGCAAAGGCC GCGAAACGGTCACTGAAGGCGCGGTGTACCGTTGCGTCGGCCGTCTGGCCTGCGGTGCTCAGCTTAAGCAGGCGATCATTCATTTTGTCTCGCGCCGGGC GATGGATATTGAAGGGCTGGGCGAGAAAAGCGTTGAGCAGTTGGTGGACGAAGGTTTGGTGCGTTCGCCGGCAGATCTGTACATGTTGAATTTCGATCAG ATTGTCGAGCTGGAGGGTTTTGCCGAGTTGTCGACCAACAACCTGCTGGCCGCCATCGCTGACAGCAAGCGGCCGACACTGGCCCGCTTTATCTATGCCC TGGGCATTCCGGATGTGGGCGAGGAAACCGCCAAAGTGCTGGCGCGCTCGCTGGCTTCGCTGGAGCGCGTCCAGCAGGCGTTGCCGCAGGTGCTCACGTA CTTGCCGGATGTCGGTCTGGAGGTCGCCCATGAGATTCACAGCTTCTTCAGTGATGAGCATAACCAGCAGGTGATCCAGCAGTTGCTGGAGCGCGGCCTT GAGTTGCAGGATCAGGGCGATCTGGGGGCTGAATTTGCCGCGAGCGCGACGTTGGGTGGCTTGATCGACAAACTGCATATCCCGTTTGTGGGGCCGGGCG GCGCGCAAAAGCTAGCCGACAAGTTTGGTTCGTTGCAAGGCGTGATCGATGCGGACTGGCTCGACATGCGCCAGGCCTTGCCGGAGAAGCAGGCCAAGGC GGTGCGAGCGTTTTTTGATAACCCCGACAATGCAAACCTTGCGCTGGCGATCGAGGCGCAGTTGCGTGATTTTGGCATGCACTGGCACAGCGAGAAAAAA GTCGTGGTCGGTTTGCCTCTGGCAGGGCAGACCTGGGTGCTGACCGGGTCGCTGGAACTGATGAGCCGCGATGTGGCCAAGGACAAGCTCGAAAGCCTGG GTGCCAAGGTCTCGGGTTCGGTCTCGGGCAAGACCCATTGCGTGGTGGCGGGGCCGGGTGCGGGGTCCAAGCTGGTTAAGGCCAATGAGCTGGGGCTCAA GGTGCTGGATGAGGAGGCGTTTGTCGCCTTTCTGGCGCAGCAGGGCATCAGCCTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCTGTGCAGGCGCTGCCGGGCGGCGTCCGGCAGCGTAGCCGGGTCAAAAAAGCCGTTTTTGTCGCTCGAAGGGAATCGCGTGCTGCTGATTTTCCCCGC AGGACGCCCGACCCCGCCCTGTGATTCGCGGACGCCGACCCGGTAATCCAAGTACTTGAGCCCATTCATTTTTTTATTCTTGAATAGGCGGTTGTAACTT TTCTTCAGACAGGTACAATGGCGCCGTTCGCTGCTAGGCGAATGTTGTTATGGTGACCCTATCGGTCCCTCCGCAACGATTACCCGTGAACCTGGTCAGA TCCGGAAGGAAGCAGCCACAGCGGGAACATTGTGTGCCGGGGTGTGGCTGGTGGGGTTGCCTCCATTTTGAATCCCCCTTTTTTATCTCCTCACAACGCC GGTTACGACCTGGCGGTGTTTTTGTGTGCGTGTTCGTTTTGCCGTCTTTTTTGCGCCCAGTCAGGTGTTGAATCACGCGATATGAAGGGCAGTTAATGAG
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTAAHDRILALRAELDQHNYRYHVLDEPSIPDAEYDRLLHELKALEAEHPEWVTPDSPTQRVGSAALSAFTQVRHEVPMLSLGNAFDEADMREFDRRVNE GLDLPSGDLFGGGAEVEYSCEPKLDGLAVSLLYRDGHLVRGATRGDGATGEDISVNVRTVRNIPLKLHGSGWPAVLEVRGEVFMSKAGFERLNETQMAAG GKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSEEFADTHIGNLKQLQKWGMPISHELKLAKGIAECLEYYRDIGERRASLPYEIDGVVFKVNS LASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVLD RRPEHARPVHIPHNCPVCGSHVERTQLIKRSKGRETVTEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQLVDEGLVRSPADLYMLNFDQ IVELEGFAELSTNNLLAAIADSKRPTLARFIYALGIPDVGEETAKVLARSLASLERVQQALPQVLTYLPDVGLEVAHEIHSFFSDEHNQQVIQQLLERGL ELQDQGDLGAEFAASATLGGLIDKLHIPFVGPGGAQKLADKFGSLQGVIDADWLDMRQALPEKQAKAVRAFFDNPDNANLALAIEAQLRDFGMHWHSEKK VVVGLPLAGQTWVLTGSLELMSRDVAKDKLESLGAKVSGSVSGKTHCVVAGPGAGSKLVKANELGLKVLDEEAFVAFLAQQGISL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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