Pseudomonas fluorescens AU2390, AA041_RS18260 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU2390 Contig_70, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGCGCTACCGTGAGTTGGCGCGCGGTGTTCACCCGGATCGCTATGCTGATGCTTCCGAGCGGGAGCAGCGCATGGCGCTGGAGCAGTCCGCCAGCCTTA ACGAGGCCTATCAGACACTCAAAAGCCCATCCAGGCGCGCGCGTTATTTGCTCGAACTCAAGGGTAATGACGTGCCTCTGGAAGCAACGGTGCATGATCC TGAGTTTTTGATGCAGCAGATGCAGTGGCGCGAAGAACTTGAAGACTTGCACGACACCGCCGACATGGCAGGTATTGCAGCCTTCAAGCGTCGACTGAAA GACGCTCAGCAAGCCTTGAACGACAGCTTCGCTGCTTGTTGGGATGATGTTGCGCAGCGTGAACAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCG ACAAGCTCACTTACGAAGTGCGCCAGCTAGAAGAGCGCCTCGACGATTAACTCCGTGCTTTTCCGATTGCACGCCTGATTACAGATAAGTCCTGATAACG
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| DNA Sequence for Gene |
>AA041_RS18260
|hscA
ATGGCCCTACTGCAGATCGCCGAACCCGGCCAAAGTCCTCAACCGCACCAGCGACGTCTGGCTGTGGGGATCGACTTGGGCACCACCAATTCGCTGGTTG CTGCGTTGCGCAGTGGCCTTTCCGAGCCTCTGGCTGACGCAAGCGGCAATGTCATTTTGCCCTCAGCCGTGCGTTATCACCCTGACCGCGTAGAGGTGGG TGAATCAGCGCGCCTGGCGGCTTCAGCCGATCCGTTCAATACGGTGTTGTCGGTCAAGCGCCTGATGGGGCGTGGTCTGTCCGACGTAAAGCAACTGGGC GAGCAACTGCCTTACCGCTTTGTGGGCGGTGAGTCGCACATGCCGTTCATCGATACGGTTCAAGGGCCCAAAAGCCCGGTCGAAGTTTCGGCTGAAATCC TCAAGGTATTGCGCGAGCGTGCCGAGAAAACACTGGGTGGTGAATTGGTCGGTGCCGTGATTACGGTCCCCGCTTATTTTGACGACGCTCAGCGTCAGGC GACCAAAGATGCGGCCAAGCTGGCTGGTCTTAATGTGTTGCGTTTGCTCAATGAACCGACGGCTGCTGCGGTGGCTTACGGTCTTGACCAGTCTGCTGAA GGTGTTGTCGCTATCTATGATCTGGGCGGCGGCACGTTTGATATTTCAATCCTGCGCCTGACCGGCGGTGTATTCGAAGTGTTGGCGACCGGCGGCGACA GCGCGCTGGGTGGTGACGATTTCGACCATGCCATTGCTAATTGGATAGTCGAGCAGGCAGGGTTGTCGGCTGATCTGGACCCCGGCACTCAGCGTCAACT GCTGCAAAGCGCCTGCGCGGCCAAGGAAGCGCTGACGGATGCGTCGAGCGTGACGGTTACGTTTGGCCAGTGGTCTGCCGAGCTGACCCGCGAAAGGCTC GATGCGCTGATCGAGCCAATGGTCGCCCGCAGCCTCAAAGCCTGTCGCCGAGCCGTGCGCGACGCCAATATCGAAGTCGAAGATGTGCAGGCCGTGGTCA TGGTGGGTGGATCGACGCGCGTCCCTCGGGTGCGCGAGGCAGTCGCCGACATGTTTGGCCGTCAGCCGTTGACTGACATCGACCCGGATCAAGTGGTTGC CATTGGGGCAGCGATCCAGGCCGATACGCTCGCGGGCAACAAGCGTGAGGGGGGGGAGTTGCTCCTGCTTGACGTGATCCCGTTGTCGCTCGGTCTTGAG ACCATGGGTGGCCTGATGGAGAAAGTCATTCCTCGCAACACCACGATTCCCGTCGCGCGAGCTCAGGATTTCACCACTTACAAAGATGGCCAGACGGCCA TGATGATCCACGTACTGCAGGGTGAGCGCGAGCTGATCAGCGACTGCCGTTCGTTGGCGCGTTTCGAGTTGCGTGGCATACCGCCGATGGTCGCAGGTGC CGCGAAAATCCGCGTGACTTTCCAGGTGGATGCCGACGGTTTGCTCAGCGTGTCAGCCCGTGAAACGGGATCGGGCGTTGAAGCCAGTATTCAGGTCAAG CCGTCCTACGGCCTGACGGATGGTGAAATCGCCAAAATGCTCAAGGATTCGTTCCAGTACGCAGGTGACGACAAAGTGGCTCGCGTGTTGCGTGAGCAGC AAGTCGATGCGCAGCGCCTGATCGAAGCCGTGCAAGCCGCGCTGGAGGTGGACGGTGACCGTCTGCTTGATGCTGAAGAGCGCAAGGTGATCGAGCTGCA CATGCAGCAATTGTCCGAATTGTTAAAAGGCACCGATGGTTACGCCATTGAGCAGCAGACCAAGCGTCTGTCGCACGTGACCGATGCCTTTGCTGCCCGC CGTATGGATCTGACTGTCAAGGCGGCTCTGGCCGGGCGCAACCTGAATGAAATCGAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGATGCCGCAGATCATTTTTCTGCCACACGCCGAGCATTGCCCGGACGGTATGGTTGTTGAGGCCGAGACCGGTAAGTCGATCCTCGAAGTGGCGCATG ACAACCACATCGAAATCGAAAGCGCCTGCGGTGGCGTCTGCGCCTGCACCACTTGCCACTGCATCATTCGCGAAGGGTTTGATTCGCTGGAAGAAGCTGA CGAGCTCGAAGAAGACTACCTTGATCGCGCGTGGGGCCTGGAGGCACACTCGCGTCTGAGCTGTCAGGCCAAGGTCGGGACCGAAGACCTGACGGTCGAA ATCCCGAAGTATTCGCTTAATCATGCTGCCGAAGCGCCGCACTGATTCGATCGCTGCCGGGGTGCGCTGACTGATTCGGGTCATTCCCTCTTTTCAGCCG CGCCAAGGTTCTGAGCGGTATAAGACTCTGCTTTTAAAGGAAGTGTCATGAGCCTTAAATGGGTTGATGTACAGGAAATCGCGATTCAGCTGGCTGAGGC
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| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGLSEPLADASGNVILPSAVRYHPDRVEVGESARLAASADPFNTVLSVKRLMGRGLSDVKQLG EQLPYRFVGGESHMPFIDTVQGPKSPVEVSAEILKVLRERAEKTLGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLDQSAE GVVAIYDLGGGTFDISILRLTGGVFEVLATGGDSALGGDDFDHAIANWIVEQAGLSADLDPGTQRQLLQSACAAKEALTDASSVTVTFGQWSAELTRERL DALIEPMVARSLKACRRAVRDANIEVEDVQAVVMVGGSTRVPRVREAVADMFGRQPLTDIDPDQVVAIGAAIQADTLAGNKREGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARAQDFTTYKDGQTAMMIHVLQGERELISDCRSLARFELRGIPPMVAGAAKIRVTFQVDADGLLSVSARETGSGVEASIQVK PSYGLTDGEIAKMLKDSFQYAGDDKVARVLREQQVDAQRLIEAVQAALEVDGDRLLDAEERKVIELHMQQLSELLKGTDGYAIEQQTKRLSHVTDAFAAR RMDLTVKAALAGRNLNEIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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