Pseudomonas fluorescens AU2390, AA041_RS17000
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU2390 Contig_68, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTCCGGCCTCAAAGAAAATGTTCGACAGTTTTGGGTCCTGACTGCCCAGCGTCATCATCAAACGGTGCAGGTTCAGGGAGGCCTGGCTGTTAATCAGCG TATGAAATCCCCGGCCGATGTTGAGCAGCACCTGCTCGACCGGAACACCCTCAGGCAATGAAAAGAACAGGTCCGGCAGTTGTTCGGAGCAGGTGGCCTT GATCGCGGCCGAGAACAGGTTTTCCTTGTCGGTGAAATGGCTGTAGACCGTCAATTTCGACACACCGGCGTGGCTGGCGACCGCGTCCATGCTGGTGCTG GCAAATCCTTTGCTCAAAAAAAGACATTTGGCCGCCTCAAGGATCGCATGGCGTTTGGCCATGTCCTTGGGGCGTCCGGCGGTATTGGGCATTAAAGGAT GATCAGACATTTCCGTTTATTACTGGACTGGTGAGTTTGGTATTAATAACATGCCGGCCAGTATAAATATTCCAAGCCCCATAAGCGAAAGGTCGTCTCC
|
|
| DNA Sequence for Gene |
>AA041_RS17000
ATGTTGCGTCATGCCTTGCCCCGCGCTGTGCCTGTCTGTCTGGTGTTTTTGTTAGCTGCGTGCGGGCATGAGGAGCCTGTTCAGGTGAGCATCAGCCCCG CCATCGTGGTGCAACCTCAGCCTTCGGCAGTGGCCACCCAGAGTTATCCCGGCGAAGTCCGTGCCCGCTTTGACCCGCAACTGGCCTTTCGTATTGGCGG CAAGGTCACTAAACGGTGGGTGGATGAAGGCGAGCGGGTCAAGGCCAATCAGTCGCTGGCCGAACTGGACCCCCAAGACGTTCGCCTGCAACTGGAAGCC ACCCGCGCTCAGGTGGCGGCCGCGCAGGCCAACCTGAGCCTGGTGCGATCGGAGCGCGACCGCTACAAAACCCTGTTGGAGCGGCAGATGGTCAGCCGCT CGCAGTTCGATAACGCAGAAAACCTCTACCGTGCGGGCGAAGCCAAGCTGCAGCAGCTTAAGGCTGAACAGGATGTGGCCAGTAATCAGGCCAGCTACGC GGTGCTGCGCGCCCCGCAAGATGGCGTGATTGCCCAGCGCCAGGTGGAAGTCGGGCAAGTCGTGTCGGCCGGTCAGACCGTTTTTTCGTTGGCCGCCGAC GGAGAGCGTGACGTGTTGATCAGCCTGCCTGAGCAGGCGTTCGGCCGTTTCAAGATCGGGCTGCCGGTGTCGGTTGAGCTGTGGTCACAACCCGGTCAGC GTTTCAGCGGGCGGATTCGCGAACTCTCACCCTCGGCTGACCCCAAATCCCGGACCTTTGCCGCGCGCATCGCCTTCACGGCGGGCGAAGTGCCTGCCGA GCTGGGCCAGAGTGCGCGGGTGTTCATTGCGCAGGAGGGGGGGAATGCGTTGTCCGTGCCGCTGTCAGCCTTGAGTGCGGAAAACGGCGCGACGTACGTC TGGCGTGTGGGTCAGGGCAACAAGTTGCAGCAGGTGGCGGTACGGGTTGGCCCGTATGGCCAGAGCAGTGTGCCGGTGCTGGAAGGGCTGACGCCCGCCG ATTGGGTGGTGGCGGCTGGCGTGCATGTGCTGCACGACGGGCAAGAGATCCGGCCGATTGATCGCTCCAACCGAACGATCAATACCGCGGCGAAGGAGTA A
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TACCCATGGGCTTTAACCTGTCTGCGTGGGCATTGCGCAATCGCCAGATCGTGCTGTTTTTAATGTTACTGCTGGCCATCGTTGGCGGGCTTTCCTACAC CAAATTAGGCCAGAGCGAAGACCCGCCGTTCACCTTTAAGGCCATGGTCATTCGTACGCTGTGGCCAGGCGCCACGGCAGAAGAAGTGTCACGTCAGGTC ACTGAGCGGATCGAAAAGAAGCTGATGGAAACCGGGGAGTACGAGCGCATCGTGTCGTTCTCGCGCCCCGGTGAGTCGCAAGTGACGTTTATGGCCCGGG ACTCCATGCACTCCAACCAAATCCCCGAGCTGTGGTATCAGGTCCGCAAAAAGATCAGCGACATTCATCACAGTTTGCCGCCGGGGATTCAGGGGCCTTT TTTCAACGATGAATTCGGCACCACATTCGGCAATATCTACAGCCTGAGTGGCGAAGGGTACGACTACGCGGTGCTCAAGGACTACGCCGACCGCATCCAG
|
|
| Amino Acid Sequence |
>RND transporter
MLRHALPRAVPVCLVFLLAACGHEEPVQVSISPAIVVQPQPSAVATQSYPGEVRARFDPQLAFRIGGKVTKRWVDEGERVKANQSLAELDPQDVRLQLEA TRAQVAAAQANLSLVRSERDRYKTLLERQMVSRSQFDNAENLYRAGEAKLQQLKAEQDVASNQASYAVLRAPQDGVIAQRQVEVGQVVSAGQTVFSLAAD GERDVLISLPEQAFGRFKIGLPVSVELWSQPGQRFSGRIRELSPSADPKSRTFAARIAFTAGEVPAELGQSARVFIAQEGGNALSVPLSALSAENGATYV WRVGQGNKLQQVAVRVGPYGQSSVPVLEGLTPADWVVAAGVHVLHDGQEIRPIDRSNRTINTAAKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|