Pseudomonas fluorescens AU2390, AA041_RS16285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU2390 Contig_68, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGAGTGACTTAACGCCCGGTTTCGACCGGGCTTAGTCCCCCCGAACGGCAAACACCCCCCTCCCGGCCTCACCTCGCCCTGCACACACCCCGGCAAGA CCCACGCAAAAATAATCTGCCTGCGGCAAACCCTCGCCCAGCCGCTGCCTCGCCCAAGTCCACCCTAAAATCAGGGCATTTCGTCGCATCCGCGGAAAAA AACTGGCTGAAATACCCTGTACAAAACCCGTATACTCCCGCCGTCAAAAGGGCTTGATATATCCCCTTCCCGGGTTATAAACCCACGCTGCTCCGGCCCA AGGCCAGGCTGCGATGCACAAACCACTGCATCCCCTCAGCGACAGCGGGCCAACCCTACGAATACATTCATGTTTTTGCGTGCGCTTACCGCTGCTGCAA GCAACATTCCTTAGATCCAAGCGGCCAATGGCCGTGTGACAACTCAACCATTAAGCGTTATCACACGGGCGTCAGGCCCTCACGCAGGAGACGACACGTC
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| DNA Sequence for Gene |
>AA041_RS16285
ATGCTGAGCTGGGACGAATTCGATAAAGAAGATGAAGGCGAAGTCGCCGTCAAAGGCGCCAATGCCGGTCACGCAACCGAAGCCAACATGGACCGCCTGG ACACCGCCGGCGGCGTTGCGGCACTTGAGGCTCGCGCTGTCACGGCCAGTGACTCCGAGGCCATCAAGCGTGCCAAGGCCGCACTGGACAACCTTGATAT CGCTGAAGGCCTGGCCGAGCTCGAAGGCGCCAGCGCTCGTGTAGCCGTTGATGAAAAGATGATGATCAACTGCCGCGCCGACCTTAACCAGCTCGTGCCG TTCAAGTACGACTGGGCCTGGCAGAAGTACCTCGACGGCTGCGCAAACCACTGGATGCCGCAAGAAGTCAACATGACCGCCGACATCGCCCTCTGGAAAA ACCCGGAAGGCCTGACCGACGACGAACGCCGCATCGTGATGCGCAACCTGGGCTTCTTCTCCACCGCCGACTCGCTGGTTGCCAACAACCTGGTCCTGGC CGTGTACCGTTTGATCACCAACCCGGAATGCCGCCAGTACATCCTGCGCCAGGCGTTCGAAGAGGCGATCCACACCCACGCCTATCAGTACTGCATCGAA TCGCTGGCCATGGATGAAGGCGAGATCTTCAACATGTACCACGAGATTCCTTCGGTCGCCAAAAAGGCCACGTGGGGCTTGAAGTACACCCGTTCGATCT CCGATCCGAAGTTCGAAACCGGCACCGTTGAAACCGACAAGGAACTGCTGCGCAACCTGATCGCTTACTACTGCGTTCTGGAAGGCATCTTCTTCTACTG CGGCTTCACCCAGATCCTGTCGATGGGCCGCCGCAACAAGATGACCGGGGTTGCCGAGCAGTTCCAGTACATCCTGCGCGACGAGTCCATGCACCTGAAC TTCGGCATCGACGTGATCAACCAGATCAAAATCGAAAACCCGCACCTGTGGGATGCCGAGATGAAGGAAGAAGCCTCGCAGATGATCCTGCAAGGCACGC AGCTGGAAATCGAATACGCCCGTGACACCATGCCGCGCGGTGTGTTGGGCATGAACGCAGCGATGATGGAGGACTACCTCAAGTTCATCGCCAACCGCCG CCTGTCGCAAATCGGCTTGAAAGAAGAGTATCCGGGCACGACCAACCCGTTCCCGTGGATGAGCGAAATCATGGACTTGAAGAAAGAGAAAAACTTCTTC GAGACCCGCGTGATCGAGTACCAAACGGGCGGCGCACTGAGCTGGGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACCCGGCGCGGTTAAACGCTGACCTTGAAAGGCTGCCCCCACGGGCAGCCTTTTTTGTGGCCGGGCAAACGCCGCCAATTCAATCGAAATATTCGACAG ATCATGGCTTGGGCACATCGGCTCACATCAAGGGGTGGGGTCGGGATCTCGTGGCGGGAACAGATCAAAAAAATGGATTTGATCCACGCTTGAAACAACT GTATAAAAACACAGTACTTTTTCAAGCATAGACCCAGCCCCGGAGAATCCCCATGTCGAACTCAGCGATGCGCAATACGCTTGAGCAAATCGTACTCAAC CAATTCACCCCGTTGCACTGCGCTCAGGCACGCGAAATGCTGGGCTGGAGCTTTGAACGACTGAGCGAAGCGTCCCGTGTTTCGGTAGCGGCCATTAAAC GCTTTGAGTCCGGCGAACCCATTCGCGACGTCACCCTGCTGGCCCTGGCTCACCGCCTTGAGGCTGAAGGACTGGTGTTCTTTCCAGGTTTCGCTCCCGG
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit beta
MLSWDEFDKEDEGEVAVKGANAGHATEANMDRLDTAGGVAALEARAVTASDSEAIKRAKAALDNLDIAEGLAELEGASARVAVDEKMMINCRADLNQLVP FKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIE SLAMDEGEIFNMYHEIPSVAKKATWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLN FGIDVINQIKIENPHLWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFF ETRVIEYQTGGALSWD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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