Pseudomonas fluorescens AU2390, AA041_RS09380

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU2390 Contig_65, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACCTGCACCAATCAAAACCTGCCGCGCAGGCTCAAACTCGGGGACATCTGTCGCTCCTGTGAAAAAACCCCGGAGTTCCTGACCTTTCGCAACATTACCC CGGCGACCTCCAGTTATGCGCCGCCGATCAACCGTGACTTTCTGTGGAAGCTGATCAGCAACATGTCGCTGAACTACCTGTCGCTGGCCGATGTGAATGC CTTGAAGGTCATCCTCGAAACCTACGACCTACCGCGCTACTACGACCAACACGCAGAGAAAGTCAGCCAGCGGCTGCTGGGCGGACTCAAGTCGATCCGC CACGAACACGTTGACCGCTTGCACCGCGGCCTGCCCGTGCGCGGGCTACGCACCGAACTGACCGTCGACACCCAGGGGTATATCGGTGAAGGCGACCTGT TCGTTTTTGCGTCGGTGCTCAATGAGTTTTTCGCCCTTTACGCCAGCCTTAACTCGTACCACGAGTTGCGCGTAAAGAGCACACAGGGAGAGGTGTACCA
DNA Sequence for Gene
>AA041_RS09380
ATGGACACCACGTATGGGCCTACAGCCACTTCTTTGAATGGGCTGAGCCAGGTGATACGCGAGTACTCGCTGTTTCAGGCGGTATTGCTGGTGATAGAGC GGTTGCGTGACGCGCACCCGCTGCTGAGTGAAGACGACCTTTACGACCACGTGGAGTTTCAGGCCAACCCGAGCCTGGGCTTCCCGGGTAGCGATGTGGA CCGCGTGGAGTTTTTTAATGAGCACGGGCAACTGCGGGCACGTTTGCGCTTCAACCTGATCGGGTTGGTCGGGGCCAGTTCGCCCTTGCCGGCGTTCTAT GGCGAACAGGCGCTGGGTGACGGTGAAGACGGCAATCCGACGCGTCACTTTCTGGATGTGTTCCACCACCGCCTGCAACGGCTGATGTTGCCAATCTGGA AAAAGTACCGTTATCGCGCGAGTTTCCAGAGCGGTGCTCTGGACCCGTTTTCAGCGCAACTGTTTGCGTTGATCGGTCTGGGGGGCGAAGACATTCGTCA GGCCAAAGAGCTGAACTGGAAGCGCTTGTTGCCGTATCTGGGGTTGCTCAGCTTGAGGGCGCACTCGGCGGCCCTGATTGAAGCGGTGTTGCGTTACTAC TTCAAGCACGCCGAGCTGACCATCGAGCAGTGCATTGAACGGCGGGTCGAGATTCTTGAGGAACAGCGAAATCGCCTCGGCCGGGCCAACAGCTTGCTGG GGGAAGACCTGGTGCTGGGGGAACGGGTGCGGGACCGCAGCGGCAAGTTCCGCATTTATATCCGTCAACTGAACTGGGAGCGCTTTCACGAGTTTTTGCC GATCGGTTTTGGCTATCAGCCGCTGTGTGCACTGGTGCGTTTTACCTTGCGCGACCCGCTGGACTACGACATCCGGCTGGTGTTGCGTCAGGAAGAAATC CGCGAACTGCGCATTGGCGAACAGAACGCCTGCCGATTGGGCTGGACCAGTTGGCTGGGCCGCGAGCGGGCTGATGGTGTGGTGACGCTGGGCAGCAAAA TTCATTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGGCTGATGACTCATGATCAATGTAGACCTGCAACAACTGATTCAGGCGTTGGACGCCGAGACCCGGCGCGACCTCGAAGGCTCGGCTGAGCGCTGCGTG GCCCGTGGCGGTCATAAAGTGCTGGTAGAAGACTTGCTGCTGGGCCTGCTCGAACGCCCGCAAGGCTTACTGACCCGCGCGCTGCAAGACGCCGACGTGG AGCCCGGCGAGCTGAGCGCGGCACTGCAACCGCGGGCTGAGCACAACGCTTCACGCAATCCGGTGTTTGCCCCGGAACTGGTGCAATGGCTACAAGACGC GCTGTTGGTGGCCAACCTTGAGTTGGGTCAAAGCCAGGTTGAGCAGGCGGCATTGATTCTTGCGCTGCTACGCAATCCTATGCGTTACGCCGGCAGCCAT TATTTACCTTTGCTCAGCCAGTTGAACATCGAACGCCTCAAAGGGTTTGCGCTGTCGCATACCCCGCAGGATGACGCCGCCAAGCCCACGGTGCAGGGCG
Amino Acid Sequence
>type VI secretion protein
MDTTYGPTATSLNGLSQVIREYSLFQAVLLVIERLRDAHPLLSEDDLYDHVEFQANPSLGFPGSDVDRVEFFNEHGQLRARLRFNLIGLVGASSPLPAFY GEQALGDGEDGNPTRHFLDVFHHRLQRLMLPIWKKYRYRASFQSGALDPFSAQLFALIGLGGEDIRQAKELNWKRLLPYLGLLSLRAHSAALIEAVLRYY FKHAELTIEQCIERRVEILEEQRNRLGRANSLLGEDLVLGERVRDRSGKFRIYIRQLNWERFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRQEEI RELRIGEQNACRLGWTSWLGRERADGVVTLGSKIH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site