Pseudomonas fluorescens AU2390, AA041_RS04550
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU2390 Contig_61, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCCAGAGCAGGGCTTTTTCGGGGTGGGGGTTGCCTATATTTTGATCGCACCACACAGAACTTGCTCAGCAAGAAGGTCTTTGAAATGTCCAGCAGTATG GGTATGGCCAGCGTTTTCGCTTTGTCGTCTTTGTTGTTGTCGCCTTTGGCCATGGCGGAAGAATCGCCAGCGTTTGTTGCACAAAATGCAGCCCGCGCAG CCGCCTTTGAACAGCACCAAAAAGAACTCGCCGCCAGCCACCAACACGAGGCACAGCCTCAGCACACACAGGTTAAAGCCAGCACCAGCGATGACAGCAA GGACAGCTGATTCCTTCCAGGAAGTCTTCCCGACCCAGTCAGTCACGGCCTTTATATGTGACTGATTGTTTCAAAAGCCGCTACTATAGCGGCTTTTTTT TGTTCTCAAAAAGCCGTCACGGCGTTTGGCGTCTTTCAAAAAGAGTCCGAATTTCTAACGACAATAAAAACTGCCATCACCCAAAAGGAGCTACTGACCG
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| DNA Sequence for Gene |
>AA041_RS04550
GTGAAGAACGCACTCAAATTCAGCCCGCTATTCCTAGCGCTGGCTGCAACGATCCCGACCCTTGCTTACGCCGATGATGAAACGGCCAAAGACGGCTTTT TTGAAGGTTCGAGCCTCAAGCTGCATTTTCGCAATTACTACATGAACCACGATATTCGCAGCCCCAAAGCGGATGACAGTAAAGAGTGGGGCCAAGGGGT CATCGGGCGGTTCGAGTCGGGCTTTACCCAAGGTGTGGTGGGCTTCGGGCTAGACGCTTACGGCATGCTCGGTCTGAAACTCGACGGCGGTGGCGGTACG GACGGCAGCAGCATCCTGCCGGTCAGCGACGGTAGTGGCAAAGCGCCTACCGCGTTTTCGTCCGCTGGCGCTGCGCTAAAAATGCGCGCCTTTGACACTG AGTTGAAAGCGGGCGACATGTTCCTCACCAACCCGGTGATCGCCGGTGGCGAGACGCGTATGCTGCCGCAGACCTTCCGCGGTGTGACGCTGACTAATCA CAGCGTGGATGGCTGGATGTTCGAAGGCGGCCAGGTCAGCTTCGAAAAACCTTACAACCAGAGCGGCATGCGCCGCCTGACGACCATGTATGGCAACCTC GATGGTCAGAGCAGCAAGCACATGAACTGGGCTGGCGCCTCGTGGAGCGGCGTGCCTGAACTCACCAGCAACCTGTATGCGGCCGAGCTGCAAGACATCT GGAACCAGTACTACTACGATCTGGATTACACCTACGCCCTGACCGATAGCGTCAGCCTGAACCCGGGGCTGCACTTCTATCACACTCAGGACACAGGCAA GGCCCTGCTGGGTGACATCGACAACAACACCTTCAGCCTGCATTTTGCCGTGGCTGTCGCCGGGCATACGGTGACCGCGGTGTACCAGCGGGTCAATGGC AACACGCCGTTTGACTACATCTATCAGGGCGACAGCGTTTATCTGGATAACTCGCAGCAGTATTCGGACTTCAACGGGCCGAACGAACGCTCGTGGAAGC TTCAATACGAATATGACTTTGCCGGCGTGGGCCTGGCCGGGCTGACGTCCATGATTTCGTACTCGCGCGGTGAACTTGACCTGACCAAGGTTGACCCCAA CAGCGTGGGTTACGGCAATTGGTACAACGCTGACGGCAAGCACGCCAAACACTGGGAACGCGACCTGACCGTCAAATATGTGCTGCAGGAAGGCCCGGCG AAAGACCTGGGCGTCGCGTTGCGCTGGTCGGCCAACCGGGGCAATGAGGCGTATCAGGCGGTCGACAGCAATGTCGATGAATACCGCGTCATCATCGACT ATCCTCTTGATGTGTTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCCTGATACAAAGCCAGCGTTTACGCTGGCTTTTTTGTGGGGGTGTGCTCATTTAGGGGCTGTCTAGAGGCCGACCGCAGCATGGCAATAACCCACCAC TCATCTAAACCACCGATCACGCAGGGCTGGTTGTTGATCGCCATGACGGCGTGCGTCATAGCCATTCTCAGCATCAATGCGTTTTTGCTGATGCGCGAGC ATCGCAGTGTTGAACTGGCGGCCATCCGTACCTCGCTCAATATTGTTCGCCTGATCGATCGCGATGTTCAAAACACCGTTGAGCAATACGACTCCGCACT CAGCGCGCTGATCCGGGTCTCGAAACGTGGCGACCTTGGCAACCTTTCCCAGCCGCTGAAGCAAATGTTGATGTTCGATAAAGCTGAAGAAACACCCGAC AACGGTGGCTTTTTCCTGCTCAACGCCCGAGGCGATCTGGTGGTCAGCTCCCTTGCCGATTACACGCCCGGTAAAAACTACAGTCATTGGCAAAGCTTTA
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| Amino Acid Sequence |
>porin
MKNALKFSPLFLALAATIPTLAYADDETAKDGFFEGSSLKLHFRNYYMNHDIRSPKADDSKEWGQGVIGRFESGFTQGVVGFGLDAYGMLGLKLDGGGGT DGSSILPVSDGSGKAPTAFSSAGAALKMRAFDTELKAGDMFLTNPVIAGGETRMLPQTFRGVTLTNHSVDGWMFEGGQVSFEKPYNQSGMRRLTTMYGNL DGQSSKHMNWAGASWSGVPELTSNLYAAELQDIWNQYYYDLDYTYALTDSVSLNPGLHFYHTQDTGKALLGDIDNNTFSLHFAVAVAGHTVTAVYQRVNG NTPFDYIYQGDSVYLDNSQQYSDFNGPNERSWKLQYEYDFAGVGLAGLTSMISYSRGELDLTKVDPNSVGYGNWYNADGKHAKHWERDLTVKYVLQEGPA KDLGVALRWSANRGNEAYQAVDSNVDEYRVIIDYPLDVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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