Pseudomonas fluorescens AU2390, AA041_RS12940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU2390 Contig_47, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACGCCAATCTGGGCGCTGGCAAATTGGCAGATAAACCATTCAAGGCAATTGGGCGCCCAGATGCCCAGCCGGTCGCCGGCTTGCAGCCCCAGCGCCATG AAGCCACGGGCATGCAGGTCCACAGCACGACTCAATTGCGACCAGCTCAGGCGCTGGTGTTGATGGCGCACAATCAGCGCCTCGTTCTCGGGGTAACGCG CGGCCGTACGCTCAAACGCCTGGCCGATGGTCAATGTCAGCAGGGCCTTGTCCTGCGCACCCTGGCTGTAACTGGGGGCTGATTGCGACGTCATGACAAC TCCTCTTGTGATTATTGTTGGGAGTATGGGAAAGCGCTCACAAGCGCCCTCTCAATCAGAAGAATAGCAATCACTCTGGCTTAAGTTGACGTTAACGTAA AGGTCATTGACAGGCCCAGGTGCCAAGTTTACGTTTACGTAAAGCTTCCCCCTGGCGACGCAGTAACCGCCTCATACAAGAACAATGAACAAGGTGCCCC
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| DNA Sequence for Gene |
>AA041_RS12940
ATGAGCTACCCGACTTTGAACTTCGCCCTGGGCGAAACCATCGACATGCTGCGCGAACAGGTCCAGTCATTCGTCGCCGCCGAACTGGCGCCCCGTGCAG CGCAAATCGACAAGGACAACCTGTTCCCGGCAGACATGTGGCGCAAGTTTGGCGACATGGGCTTGCTGGGCATCACCGTTCCGGAAGCCTACGGCGGCAC CGGTCTCAGCTACCTGGCCCATGTGGTGGCCATGGAAGAAATCAGCCGTGGTTCGGCGTCGGTTGCGCTGTCCTACGGTGCGCATTCGAACCTGTGCGTG AACCAGATCAACCGCAACGGCAGCGATGCTCAAAAACGTCACTACCTGCCCAAACTGATCAGCGGCGAACACATCGGCGCGCTCGCCATGAGCGAACCCA ACGCCGGCTCTGACGTGGTGTCCATGAAATTGCGCGCTGACAAGCGCGGCGACCATTTCGTGCTCAACGGCAGCAAAACCTGGATCACCAACGGCCCCGA CGCCGACACTTATGTGATCTACGCCAAGACCGACATCGAAAAAAAGGCCCATGGCATCAGCGCCTTTATTGTCGAGCGCGACTGGAAAGGCTTCAGCCGC AGCAAGCATTTCGACAAGCTGGGCATGCGCGGCTCCAACACCGGCGAGCTGTTTTTCGACAACGTTGAAGTGCCTGAAGAAAACCTGCTGGGCCCCCTCA ACGCCGGGGTCAAGGTGCTGATGAGCGGCCTCGATTACGAGCGCGTCGTACTGTCGGGCGGTCCGACCGGAATCATGCAAGCCTGCATGGACCTGGTGGT GCCCTACATCCATGACCGCAAACAGTTCGGCCAAAGCATCGGCGAGTTTCAGCTGATTCAGGGCAAAGTGGCCGATATGTACACCCAGCTCAATGCCAGC CGTGCCTACCTGTATGCGGTCGCGGCCGCCTGTGAACGGGGCGAAACCACCCGCAAGGACGCCGCCGGGGTGATCCTCTACAGCGCCGAACGCGCCACGC AAATGGCCCTCGACGCCATCCAGATCCTCGGCGGTAATGGCTACATCAATGAATTCCCGGCCGGACGTCTGCTGCGCGACGCGAAACTGTACGAAATCGG TGCGGGCACCAGCGAGATTCGCCGGATGCTGATTGGCCGCGAACTCTTTAACGAAACCCGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGTGGCCCATGTCTATCTTGCACAGCACCGTCAACCCGCGCTCCCCCGAGTTCGCCGCCAATCGCGACGCCATGCTCAAACAGGTGGACGCCCTGCAC AGCGTGCTCGCCCATGTGCAACAGGGCGGCGGTGCCCGCGCCCAGGAGCGCCACACCGCCCGGGGCAAACTGCTGCCGCGTGAACGCATCGACCGGCTGC TGGACATTGGCTCGCCCTTCCTCGAACTGAGTCAGTTGGCGGCTTACGAGGTGTACGGCGAGGACGTCCCGGCTGCCGGCATCATTGCCGGCATCGGTCG GGTTGAAGGCGTGGAATGCATGATTGTGGCCAACGACGCCACGGTCAAAGGCGGCTCGTACTACCCGCTGACGGTCAAAAAGCACTTGCGGGCGCAGACC ATTGCCGAGCAAAACCGGCTGCCTTGCATTTACCTGGTGGATTCGGGCGGCGCCAACTTGCCGCGTCAGGACGAAGTCTTCCCGGACCGCGAGCACTTTG
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPTLNFALGETIDMLREQVQSFVAAELAPRAAQIDKDNLFPADMWRKFGDMGLLGITVPEAYGGTGLSYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGSDAQKRHYLPKLISGEHIGALAMSEPNAGSDVVSMKLRADKRGDHFVLNGSKTWITNGPDADTYVIYAKTDIEKKAHGISAFIVERDWKGFSR SKHFDKLGMRGSNTGELFFDNVEVPEENLLGPLNAGVKVLMSGLDYERVVLSGGPTGIMQACMDLVVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAAACERGETTRKDAAGVILYSAERATQMALDAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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