Strain | Pseudomonas fluorescens strain AU12644 Contig_6, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ATCTGGTACTTCCTGGTGCCCGATCTGCTGCCGCCGGACTTGCAGGAGTGGTACAAGCAAGACCTCAACCCGACCACCTCGGCTTATCTGAGCGTCGTGG TGTGCCTGGGCCTGTTCACCGCCGCCCGGGTGTGCGAACAAGTGCGTACCGGTATCGAAGCGCTGCCCCGCGGTCAGGAGTCAGCCGCTCGCGCCATGGG TTTCAGCATGACGCAGATTTACTGGCACGTGCTGCTGCCTCAGGCGTACCGGATCATCATTCCGCCACTCACTTCCGAATTCCTCAACGTGTTCAAGAAC TCGTCGGTGGCCTCGTTGATCGGTTTGATGGAACTGCTGGCGCAAACCAAACAGACAGCCGAATTCTCAGCCAACCTGTTTGAAGCCTTCACCTTGGCCA CGTTGATTTACTTCACCTTGAACATGAGCCTGATGTTGCTCATGCGCCTGATCGAGAAGAAAGTCGCCGTACCCGGCCTCATGTCTCTGGGGGGCAAATA
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DNA Sequence for Gene |
>AA054_RS02575
ATGGACTTCTTTGATTTCAGCGGGATCGTCCCTGCCCTGCCGGGCCTGTGGAACGGCATGATCATGACCCTCAAGCTGATGGTGATGGGCGTGATCGGCG GCGTAGCGCTGGGGACCGTTTTGGCCCTCATGCGCCTGTCTTCAAGCAAGTGGCTGTCCAATCTGGCGGGCGCCTACGTCAACTACTTCCGCTCGATTCC GTTGCTGCTGGTCATCACCTGGTTCTACCTGGCCGTTCCCTTCGTGCTGCGCTGGATCACGGGTGAAGACACCCCGATCGGCGCCTTCGAGTCGTGCCTG GTGGCATTCGTCATGTTCGAAGCGGCGTACTTCTGCGAGATCGTGCGAGCGGGCGTACAAGCCATTCCTAAAGGCCAGATGGGCGCCGCCAAAGCGCTGG GCATGAGTTACGGCCAGGCCATGCGCCTGATCATCCTGCCTCAGGCATTCCGCAAAATGACCCCGCTGCTGCTGCAACAAAGCATCATCCTGTTCCAGGA CACCTCGCTGGTTTACACCGTAGGCCTTGTGGACTTCCTCAATGCCTCGCGCTCAAGCGGCGATATCATCGGCCGCTCCAATGAGTTCCTGATCTTCGCC GGTCTGGTGTATTTCATCATCAGCTTTTCCGCCTCGCTGCTGGTCAAGCGTCTGCAAAAAAGGTTTGCCGTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TCTCGATCAAGAACATCAACAAGTGGTACGGGGACTTTCAGGTACTGACCGATTGCAGTACTGAAGTCAAAAAAGGTGAAGTGGTGGTGGTCTGCGGGCC ATCGGGCTCCGGCAAGTCGACCCTGATCAAGTGCGTCAACGCCCTTGAACCGTTCCAGAAAGGCGACATCGTAGTGGACGGCATTTCGATAGCCGACCCT AAAACCAACCTGCCGAAATTGCGTTCGCGCGTGGGCATGGTGTTCCAGCATTTCGAACTGTTCCCGCACATGACCATCACCGAAAACCTGACCATTGCTC AGGTCAAGGTACTGGGGCGCAGCAAAGCCGAAGCCACCAAAAAAGGCCTTGAGTTGCTGGAACGCGTGGGCTTGTCGGCCCACGCCCACAAACACCCTGG CCAACTGTCGGGCGGCCAGCAACAGCGTGTGGCGATTGCCCGTGCGCTGGCGATGGACCCGATTGTCATGCTGTTTGACGAACCCACTTCAGCCCTCGAC
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Amino Acid Sequence |
>amino acid ABC transporter permease
MDFFDFSGIVPALPGLWNGMIMTLKLMVMGVIGGVALGTVLALMRLSSSKWLSNLAGAYVNYFRSIPLLLVITWFYLAVPFVLRWITGEDTPIGAFESCL VAFVMFEAAYFCEIVRAGVQAIPKGQMGAAKALGMSYGQAMRLIILPQAFRKMTPLLLQQSIILFQDTSLVYTVGLVDFLNASRSSGDIIGRSNEFLIFA GLVYFIISFSASLLVKRLQKRFAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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