Pseudomonas fluorescens AU12644, AA054_RS19605
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU12644 Contig_56, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCTGGCCCGCGACGGCGCCCGGGATGCGGTGTTCAACGTCTACGAGTCGCTGTTTATCGAACCGCCCAAAGACCCGACCGTGCAGGTCACGCTGTTGA GCAACCCGCAGATCAAGGTCAAGGGCCAGATCCGCGAAATCACCCCCACCGTGGCCGCCCAAAGCGGCACCCTGCAAATCAAGGTGCAGCTCGATGAACT GCCCAAGGGCATGGATTTGGGCTCGATTGTTACCGTCAACCTGACCCCGCCGCCGAGCCGCAGCATCGAACTGCCCTGGTCGGCGCTGACCAAAGACGTC AGCGAGCCCGCCGTGTGGCTGGTGGACGGCACTAACAACGTGCGCCTGCAACGGGTCAAGGTCGGGCGTTACCTGACCGGCAGCGTGATCATCAATGAAG GCCTCAAAGACGGAGAGCATGTGGTGGTCGCAGGCGGACAACTGTTGCACCCCGGCATGCAGGTCGAAATTGCCCCCACGCCAGCCGGGGGCACTCAACT
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| DNA Sequence for Gene |
>AA054_RS19605
ATGAAGCCTCTGTGGATAGTGCCCCTGGCGGCCGCCCTGCTGGTCGGTTGCTCTGAAGAAAAAGCCCCCGAGCCGGTGCGCCCCGCGCTGTTCGTGGTGG TCCAGCCCGAGCTGAGGGAACACTTCGGCCGCTTTGCCGGCACGATCGAAGCCCGCTACGAAAGCACGTTGGGCTTTCGTGTGCCGGGGCGCATTGTGCG GCGGTATTACGACGTGGGCGCGGTGGTCAAACAGGGCGATATTCTGGCCAACCTCGACCCCACCGATCAGCAGAACCAACTGCGTTCGGCGCAAGGCGAT CTGGCCAAGGTGCAGGCACAGCTCATCAACGCGCAGGCCAACGCCCGGCGCCAGCAAGAACTGTTCGACCGTGGCGTCGGCGCCCAGGCGCAACTCGACA CCGCCCAGGCCGACCTGAAAACCACCGCCGCGTCCATGCAACAGGCCGTGGCGGCGGTCAATCAGGCGCAAGACCAACTCAGTTACTGCAACCTGCGCGC TGACCATGACTCCGTCATTACCGACTGGAAGGCCGAAGCGGGCCAAGTGGTGAGCATCGGTGAAGAGGTCGTCACGCTGGCCCGCCCCGAAATCAAGGAA GCTGTGATTGACCTACCGGGGCCATTGGCCGAGGCGCTGCCCAAAGGCATCGAATTTCAAGTGGCAGGGCAGCTCGATCCCAACGTGAAAACCACCGCCC GTGTGCGGGAAATCGCCCCACAGGCCGACAGCGCCACCCGCACCCGGCGTACCCGCCTGACACTGGACCAGACGCCACCCGCGTTCCGCCTGGGCAGTTC CGTCAGCGTGACGGTCAGCAGCCCGATTGCCGAGCATTTCGAGCTGCCCGTCACCGCCCTGCAAGAAACCGACGGCAAAACCCGCGTATGGATCATTGAC ACGCCCTCGCACACCGTCAGCCCGCACGAGGTCACCGTGCTGCGCCGCGACGCACACACGGCGCTGTTGAGCGGCGGCCTTAAAGGCGGCGACAAAGTGG TCATCGCCGGGGTCAACAGCCTCACGCCCGGACAGAACGTCAGACTGGATAAGGAAAGCTCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGGGAAGAAGTTCAACCTGTCCGAGTGGGCCCTGAAGCATCAGTCGTTTGTCTGGTATTTGATGTTCGTCTCGGTGCTTGCCGGGATCTTTTCGTACAT GAACCTGGGGCGCGCCGAAGACCCGAGCTTCGCCATCAAAACCATGGTTATCCAGACCCGCTGGCCGGGCGCCACGGTCGATGAAACCATGCTGCAGGTC ACCGACCGGATCGAGAAAAAACTCGAAGAACTCGACTCCCTCGACTACGTACAAAGCTACACCCGACCCGGTGAATCCACGGTGTTCGTGTTCCTCAAGG ACACCACCGAGGCCAAGGCGATCCCACAGATCTGGTACCAGGTGCGCAAGAAGATCGACGACATTCGCGGCGACTTCCCCCAAGGCATTCAAGGCCCGGG GTTCGACGACGAATTCGGGGATGTGTACGGCACGATTTACGCCTTCACCGGCGACGGCTTCACCATGCGCCAGCTGCGCGACTACGTCGAGCACGTGCGC
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| Amino Acid Sequence |
>RND transporter
MKPLWIVPLAAALLVGCSEEKAPEPVRPALFVVVQPELREHFGRFAGTIEARYESTLGFRVPGRIVRRYYDVGAVVKQGDILANLDPTDQQNQLRSAQGD LAKVQAQLINAQANARRQQELFDRGVGAQAQLDTAQADLKTTAASMQQAVAAVNQAQDQLSYCNLRADHDSVITDWKAEAGQVVSIGEEVVTLARPEIKE AVIDLPGPLAEALPKGIEFQVAGQLDPNVKTTARVREIAPQADSATRTRRTRLTLDQTPPAFRLGSSVSVTVSSPIAEHFELPVTALQETDGKTRVWIID TPSHTVSPHEVTVLRRDAHTALLSGGLKGGDKVVIAGVNSLTPGQNVRLDKESSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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