Strain | Pseudomonas fluorescens strain AU12644 Contig_56, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCCACGGCCCTCGCCCTTTTTGAGCAATGTGCCGACCCGTTCCTTCATCTCGCGCGCCGCCTTGTTGGTAAAGGTCATGGCGACGATGTACTGGGCGCGG ATGCCACAGTTCTGGATCAAGTGCGCGATTTTGCGGGTAATCACGCTGGTTTTGCCCGAGCCCGCGCCGGCGAGCACCAAAAGAGGGCCGCCGACGTAGC TCACGGCTTCTTGCTGCCGGGGATTGAGTCGGGACATGACGAGTCAGGGGGTCGTATCTGAAAAGGGCGGGCATTTTAACAGGCTGAGCAAATATTGCTG CCACTCTGCGACAGTGTGACGTAACACTCTGTCTAAATTTGCTGCTTTTGTTACTTTCGCGCAGGATGCCGGGCGGATTTGAGGCTACCGTGAGAGGTGG ACCACAAATATGTATTTGATAACCAATGTCATTTGCCATTGGTCGTCGGCGCGTCATAATGCCCACCGCCTGAAATTACTGCAGAGTCTAGGGAGCCAGC
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DNA Sequence for Gene |
>AA054_RS19310
TTGTCTACGCCTGTCGAACCCTTGCGTTTGCTGCTATTGGCCGAAGAGCCTTCTTGGGCAGCGTTGTTGCGCGAGTGTCTGGCGCCCATAAAAACCGTTG CCGTTCTTGTGTGTGCGCCGAATTGGGAGTCGGTCAGTTATCTGTTCGAAAACGACCGCAATGCGTTGCTGCTCACCACCCCCGCGCTACAACCCGCACC GGGCCGTTGCCGGTTATCGACCATTCTGCTGCTGGAGGCTGAACCCGATGCCTCGCCGCAAGGCGTCAGCGACTGGTTCGTGGCGTCCAACCTGACGACC GATTTATTGCGCCGAAGCCTGCGGCATGTACGCGAGCGCGGCGTACTCGAACACACCTTGCAGCGCTTGGCCGAAGAAGACCCGCTGACCGGCATCGCCA ACCGCCAGGGCTTTCAGACCCTGCTGGCCGTGCGTCTGGCGGAAAGCGAAGGCCGCGGCATCGCCCTCGGGCATCTGGACCTGGACAACTTTCGCCACGC CAACGATGCCCTTGGGCACCAGGCGGGGGATCGCCTGATCCTGCAAGTGGTGGCCCGGCTCAAAAGCCAACTGGAGGCGGGCGATCAACTGGCCCGACTG GGCAGCGACGAATTCGCCTTGTTGATCGACACCCGCCGCGCCCCCGAACGCGCCGAGCAGATCGCTGAACGCATCACCGAAGCGCTGGCCGAACCTTACT GGATTGACGGCGAAAGCCTGTTGATCGGTTGCAGCCTCGGCATCGCCCATGCGCGCGCCAACGCCGGGGCCGATCCGCTGATGTGGCATGCGCACATCGC CATGCAGCAGGCCAAGAGCACGCAAGGCTGCACGTTTCACCTGTTCAATGAACGCATCAACCGCAACGCCCGCAGCCTGGCAGACCTCGAAAGCGAACTG CGCCGCGCCCTGCGCCGCGACGAGCTGGAGCTGCATTACCAGCCGCGCCTGGATTTGGGCACCGGGCAGATTGTCGGCCTTGAAGCCCTGGTGCGCTGGC GTCACGGCGAACGTGGCCTGCTGGCCCCCAGCGAGTTTGTGCCGCTGGCCGAACAAAGCGGGTTGATTGTGCCGCTGGGCTATTGGGTGATTTCCCGGGC GCTGCGCGACATGCAAGCCCTGCGCGAACACGGATTTGCGCCGCTGCACATGGCGGTCAACCTGTCGTTCCGGCAATTTCAGGACAGCCAGTTGCTCTCC ACCCTCAGCCGCTTGATTAGCGAGCGCGGGGTCGAGGCGCAATGGCTGGAATTCGAACTGACTGAAACCGCCGTGATGCGGCGCAGCGACCTGGTCAAGC AGACGATGGATGCGCTGGGGCGGCTGGGCGTGAGGTTTTCGCTGGACGACTTCGGAACGGGGTTTTCTTCTTTCGTGCACCTCAACAGCCTGCCGATCGC CTTGTTGAAAATCGACAAAAGTTTCGTCGGCGGCATGGAGAGTCGCGAAGAAAACCGCAAGCTGGTGCCCGCCATGATCAACCTGGCGCACAACCTCAAG CTGGAAGTGGTCGCCGAAGGGGTCGAAACCCCCGAGCAACTGGCCCTGCTGCGTAGCTTTGGCTGCGATCAGGTGCAGGGCTATTTCATCAGCAAGCCCT TGCCACTGACCGAACTGGTGGCCTTCTTGAGCCAGGCCATGGGCAAGCGCGAGGCGGCCTCGCGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CGGCGCGAGGCTCGGCTACGCCTACAGGCGGATCGCGGCGTTGTGCGCACGCCTGAGCATGCGCCGCATCTTCCACTCGAACGCCAGGGTCAGGCTGATA GCCGCACACGCGAGGCCCAGCGCCAGCCCCCACCACACACCCGCCGGGCCCCAATCGAAGGTGAACGCCAGCAACCAGGCCAGCGGCGCGCCAATGGCCC AGTAGCAGAACAGGCCGACGAGAAAGGTCGTGCGGGCGTCTTTCAGCCCGCGAATCGCGCCCATGGCGATGGTTTGCGCACCGTCGAACAGCTCAAACCA CGCCGCCACCGCCAGCAAGCTCATCGCCAGCTCGAACACCGGGCGGAACGCCAGATTGTCGTAGTCCAGCAACAGGCCGACCAGCTCCTTGGGCCAGAAC CAGAACACCACCGAAAAGCACAGCATGGTCGCCGCGCCAAAGCCGATCCCGACTCGCCCCGCCAGGCGTGCGCGCAACAAATCGCCACCGCCGTAATGCT
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Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLAEEPSWAALLRECLAPIKTVAVLVCAPNWESVSYLFENDRNALLLTTPALQPAPGRCRLSTILLLEAEPDASPQGVSDWFVASNLTT DLLRRSLRHVRERGVLEHTLQRLAEEDPLTGIANRQGFQTLLAVRLAESEGRGIALGHLDLDNFRHANDALGHQAGDRLILQVVARLKSQLEAGDQLARL GSDEFALLIDTRRAPERAEQIAERITEALAEPYWIDGESLLIGCSLGIAHARANAGADPLMWHAHIAMQQAKSTQGCTFHLFNERINRNARSLADLESEL RRALRRDELELHYQPRLDLGTGQIVGLEALVRWRHGERGLLAPSEFVPLAEQSGLIVPLGYWVISRALRDMQALREHGFAPLHMAVNLSFRQFQDSQLLS TLSRLISERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKIDKSFVGGMESREENRKLVPAMINLAHNLK LEVVAEGVETPEQLALLRSFGCDQVQGYFISKPLPLTELVAFLSQAMGKREAASR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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