Pseudomonas fluorescens AU12644, AA054_RS19115
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU12644 Contig_56, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCTAAAGGGCTCTTCCCAAAACACCTGTAAGGCCTTTACATTGGCGCTTACAGACGGTTTTGGGAGAGCGCTCGAAAAATCAGCGCTTCCCTAATGG CTGGTGATTTTTTAAACTGTTCAGTCCGCTCGCCCATCCGGGCAGCGCGCATATTGCATTTGCTACGAGGAAGACCATGGCCCGCGTAACCGTTGAAGAC TGTCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTGTCTACCAAGCGTGCCCGCCAACTGGCCACCGGTGGTAAAGAGCCGCTGGTTCAGTGGG AAAACGACAAGCCTACTGTTGTAGCCCTGCGTGAAATCGCTGAAGGCCTGATGAGCTACGAGTTTATCGCCAACGCTGAAATCGTCGAAGACGAACCGCT GTTTGCAGCGTTCGAGGACGAGTCCAACGAGGCGAACTAAGCCTATGCCCGGTCGACGTAGCACGGCGAAGGGTACACAGTTTTGGCAGGAGGCTTACTC
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| DNA Sequence for Gene |
>AA054_RS19115
TTGCCGAGCATAGACGCCCTCGCCGATCGCTTGTCGGCGTACCTCGGCCCGGACCAGGTCAATCTGGTCCGCCGAGCGTACTACTACGCAGAACAAGCCC ACGACGGCCAACGCCGCCGTAGCGGCGAACCTTATGTCACGCATCCGCTGGCAGTCGCGAATATTCTTGCCGACATGCACATGGATCATCAAAGCCTGAT GGCGGCGATGCTGCATGATGTCATCGAAGACACCGGTATTGCCAAAGAGGCGCTCGTCGCGCAGTTCGGCGAAACCGTGGCAGAACTGGTTGATGGTGTC AGCAAGCTGACCCAGATGAACTTCGAAACCAAAGCCGAAGCCCAAGCCGAAAACTTCCAGAAAATGGCCATGGCCATGGCGCGGGACATCCGCGTGATTC TGGTCAAACTGGCTGACCGTCTGCACAACATGCGTACCCTCGAAGTGTTGTCCGGCGAGAAACGCCGGCGGATTGCCAAGGAAACCCTGGAAATCTACGC ACCCATTGCCAACCGGCTGGGCATGCACAACATTCGTATCGAATTCGAAGACCTCGGTTTCAAGGCGATGTACCCGATGCGTTCGGCGCGCATCTATCAG GCCGTCAAACGTGCCCGGGGCAATCGCAAGGAAATCGTCAACAAGATTGAAGAGTCGCTGAGCCACTGTCTGGCCGTTGATGGCATTCAGGGCGAAGTCA GTGGTCGCCAGAAACACATCTACGGCATCTACAAGAAGATGCGCGGCAAGCGTCGGGCGTTCAACGAGATCATGGACGTTTACGCGTTCCGCATCATCGT TGATAAGGTCGATACCTGTTATCGCGTGCTGGGTGCTGTACATAATTTGTACAAACCCCTGCCGGGGCGCTTCAAAGATTACATTGCCATACCCAAAGCC AACGGCTATCAGTCGCTGCATACCACGCTGTTCGGCATGCATGGTGTACCGATCGAGATTCAGATCCGTACCCGTGAAATGGAAGAAATGGCCAACAACG GTATTGCCGCCCACTGGTTGTACAAATCCAGTGGCGACGAGCAACACACCGGCACCCATGCCCGCGCACGGCAATGGGTCAAAGGCGTGCTTGAAATGCA ACAGCGCGCAGGCAACTCCCTCGAATTCATTGAAAGCGTGAAAATCGACCTGTTCCCGGACGAGGTTTACGTATTCACGCCCAAAGGCCGGATCATGGAG CTGCCAAAAGGCTCCACGGCGGTCGACTTTGCGTACGCGGTACACACTGACGTGGGCAACAGTTGCATTGCCTGTCGGATCAACCGTCGTCTTGCGCCGC TGTCCGAACCGCTGCAAAGCGGCTCCACGGTCGAGATTGTCAGTGCCCCCGGCGCCCGCCCGAATCCGGCGTGGCTTAATTTTGTGGTGACAGGCAAAGC CCGTACCCACATCCGTCACGCCCTCAAGTTGCAGCGTCGTTCCGAGTCGGTGAACCTCGGCGAGCGGCTGCTCAATAAGGTGCTCAACGGTTTTAACAGC TCGCTGGACAAGATCCCGGCCGAGCGTGTGCAGGCGATGCTCAACGAATATCGCCTGGAACAGATCGAAGACTTGCTCGAAGACATCGGTCTGGGCAATC GCATGGCTTACGTCGTCGCCCGCCGCCTGATGGGCGAAGGTGAGCAGTTGCCAAGCCCGGAAGGGCCGCTGGCCATCCGTGGCACCGAGGGGTTGGTGCT CAGCTACGCCAAGTGCTGTACGCCTATTCCGGGCGACCCGATCGTGGGTCATTTGTCTGCGGGCAAAGGCATGGTTGTGCACTTGGACAACTGCCGCAAT ATCAGCGAAATCCGCCACAACCCCGAGAAGTGCATCCAGTTGGCATGGGCCAAGGATGTAACGGGCGAATTCAACGTCGAATTGCGCGTCGAGCTGGAGC ATCAGCGCGGCTTGATCGCGCTGCTGGCCAGTAGCGTGAACGCCGCCGACGGCAACATCGAAAAGATCAGCATGGACGAACGCGATGGTCGAATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGATCGCGTGCACCTGGCTCGCGTGATCAAAAAACTGCGTGCCCTTACCGGGGTTATCCGCATCACTCGGATGCGT GCATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGTCTACCTGCGGCCATTACAAGGAGTCAATCATGACCAAGACTGTTATCACCAGCGACAAGGCACCTGCGGCCATCGGTACTTATTCCCAGGCGATC AAAGCTGGCAATACCGTCTACATGTCCGGTCAAATCCCGCTGGACCCAAAAACCATGGAACTGGTTGAAGGCTTCGAAGCCCAGACCATCCAGGTGTTTG AAAACCTGAAGTCGGTGGCCGAAGCAGCAGGCGGTTCGTTCAAGGATATCGTCAAGCTGAACATCTTCCTGACTGACTTGAGCCACTTCGCCAAGGTCAA CGAGATCATGGGCACTTACTTCGAACAACCTTACCCGGCTCGTGCAGCCATTGGTGTTGCAGCCCTGCCAAAGGGTTCGCAGGTTGAGATGGATGCCATT CTGGTTATCGAGTAATGCCCCTCGGCGCAGCGTCCTCATGCTGCGCCAACTCCCCCGCTTTTCCCCGTTTTAAAAGGATTCCACCATGCGCAAAGCGTTA
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSAYLGPDQVNLVRRAYYYAEQAHDGQRRRSGEPYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALVAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHNIRIEFEDLGFKAMYPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAVDGIQGEVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQHTGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESVNLGERLLNKVLNGFNS SLDKIPAERVQAMLNEYRLEQIEDLLEDIGLGNRMAYVVARRLMGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLAWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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