Strain | Pseudomonas fluorescens strain AU12644 Contig_53, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AGGGTTGATCGTCTTCAGGATCGCTCTGGCGGGCCTGCTCGGCCGCCGCCGCTTGCGCACGCCGGGCCTTGCTCGCGCGCTCAATGGGCCAGCGGATCAG CACAAACAGCCCATACAGGCAAAACGCAATGATGGCGTACATCAACAGGTCGGACACGGCCCGCCAGGCGTTGTTGCCCACTTTGAACGCCAGATCAAGG GCGGTGATGGCAATCGCAGGGGCGAACTTTTCCTTGACCGGGTCAATGATGGTCGGGCTGAACAACAGCACGGCCATCAGTACCCGCAGCGGTTCACGCA GCCAGCGCCACATGAAGCGGGTCAGGCGGCACCACACGAGCAGGCAGCCCAAAGCGGCAAAGGCGTAAAGGCCCCAAGCGATCAGATAGTCGTTCTCGGT CATGGTATCCATGGTCGGCAGGCAATGAGGCGCTATGATAACGGCTTTTAGCCAGTGCGGCTGCACGGCTTCTTTTCATTCAGGTTTCCGAGAGCAGTTA
|
|
DNA Sequence for Gene |
>AA054_RS10895
ATGACCGAATCTACCTACGCAAATAGCGCTCCAGTCGCACACACCATAGAGGGTTCAGACCCCTATGCGTGGTTACAAAATCGCGACAGCAAAGAGGTTT TGGACTACCTGAAAGCGGAAAACCAGTATCAGGAAGCCCAGTTGGCCGACGAGGCGGAGCGACGTGAAGCGTTGTTTGAAGAGATCAAGGGCCGCATCCG CGAGACTGATCTGTCCTTGCCGTCGCCTTGGGGCCCTTATCTGTACTACACCCGCACCCAGGCGGGGGAAGAATACGCCCGCCATTTCCGCTGCCCGCGC CCGGCTGACAATAGCCAGCAGGTAGACGAAGAAGCCGAACATGTGTTGCTGGACCCGAACGCGCTGGCCGACGGCGGGTTTATCTCCCTGGGTGCGTTCA GTATCAGCCCGGATCATCAACGGCTGGCTTACAGCCTCGACACCAGTGGCGAAGAAACCTACCGCCTGTTCGTCAAAGAGCTGACCAGCGGGACCGTGAC TGAGCTGCCGTTCGAGGCGTGCGATGGCAGCATGACGTGGGCCAATGACAGCCAGACGCTGTTTTTCGCAACGCTGGACGACACTCACCGTCCCCACAAG CTGCTGCGCCACACGCTCGGAGAAACCGCCGCGCACGAGGTGTTCCATGAGCCGGACGGGCGTTTTTTCCTGCATTGCTACCGCTCCAGTTCCGAGCGCC AGCTCATCCTGTTGCTCAACAGCAAAACCACCAGTGAAAGTTGGGTGCTGGATGCCGATCAACCGGCCAGCCCCTTCCACTGCCTTGCGCCCCGGGTTGA GGGCCACGATTACAGTGTCGATCACGGACTGTATGAGGGTGAGTGGAGCTGGTTTATCCGCACCAATCAGGACGGGATCAACTTTGCGCTGTACCACGCC AAGGGCGAAACACCGACCCGCGATGACTGGACGCTGCTGATTGCCCACGACGACGCGGTCATGCTCGAAGGCCTGACCCTCAATGCCCATGCACTGTGTT TAAGCCTTCGCGAAGGTGGACTGCCGATCATTGAGATCCGTCCGAGCGGTTTAACGCCTTATCGGGTGCAATTACCAGACGCCGCCTACAGCCTTTATGT GCAAGACAGTCTTGAGTTCGAAAGTCCGTATATCCGTTTGCGCTATGAGGCGTTGAATCGTCCGGCACAAGTACGTCAACTGACACTGAGCACCGGCGAG CAAAGCGTGCTCAAGGAAACCCCGGTCCTGGGGCCGTTCAATGCCGACGATTACGTCAGTCAGCGCCTGTGGGCCACGGCCCCTGATGGCACCCGGGTGC CGATCAGCCTGGTGGTCAAGCGCAGCGCCCTGGGCCAGCCGACGCCGCTGTATATGTATGGTTACGGCGCCTATGGTGAAAGCCTTGACCCGTGGTTCTC CCATGCGCGCCTGAGCCTGCTCGATCGGGGCGTGGCGTTTGCCATCGCTCACGTGCGCGGCGGCGGTGAGTTGGGCGAAGCCTGGTACCGGGCGGGCAAA CAGGAACACAAGCACAACACGTTCAGCGACTTCATCGCCTGCGCAGAACATGTGATCGCTCAAGGGCTGACAACGGCCGGGCAACTGGTCATCAGTGGCG GCAGCGCGGGCGGCCTGTTGATCGGCGCGGTGCTCAATCAGCGGCCTGAGCTGTTCAAGGCGGCCATCGCCGAAGTGCCTTTTGTGGACGTGCTCAACAC CATGCTCGACCCGGACCTGCCCCTGACCGTCACCGAATATGACGAATGGGGCAACCCGCAGGAACCCGACGTCTATGAGCGGATCAAGGCCTACGCGCCC TATGAAAACGTGCGCGCACAGGCTTACCCGGCGATGCTGGTCATTGCCGGGTACAACGACAGCCGCGTGCAGTACTGGGAGGCCGCCAAATGGGTCGCCA AATTGCGCGCCAGCAAAACCGACGACAATCTGTTACTGCTCAAGACAGAGCTGGACGCTGGCCACGGCGGGATGAGCGGACGCTATCAAGCGTTGCGCGA TGTGGCGCTGGAATACGCGTTTGTGTTCAAGGTGCTGGGCCTCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
CCGAGGGCCTGGGCCTGGGCCTGAACCCGGTGCCGCTGCCCGGCTCAATCAGCAGCAGGCTTGATCTTCAGGTCTTTGCGGTCGAGCCCCGCCAAGGGTT GGTCTTTGGGCGGCGGCTGGGGCAAGTCGATGGGGGGCAGCGGGAGCAGGCTGCCGCTGCCTGCCACGGGCTTGGGCACCGGCCGCGGCGTCATCTGCGG ATAAGGCGTGGGCGTGGCTGTACCGGGCGAACCGGGTTCGGGGGTTGCAGGCATCACGGGCACAGGGCTCAATGCCCCCGCTTGCGCTGCACTTATCGAG AGCACCGCCCCTGCAATGGCCGTTAGAATAGTGCGTTTCATCAGTCACTCCGTTGCCAGACCGGCTTGTCTGCCCTCAGGCTACTCGTAACCTGCGGTTT TTGTCCTCTTCTATGAGATACCCATGAAACGTTTTGTTCTGCTCGACACCACTCCGATCCCCGATAACGGCGGCGCCCTGTGCCTGTTTGAGTATGGCGA
|
|
Amino Acid Sequence |
>peptidase S9
MTESTYANSAPVAHTIEGSDPYAWLQNRDSKEVLDYLKAENQYQEAQLADEAERREALFEEIKGRIRETDLSLPSPWGPYLYYTRTQAGEEYARHFRCPR PADNSQQVDEEAEHVLLDPNALADGGFISLGAFSISPDHQRLAYSLDTSGEETYRLFVKELTSGTVTELPFEACDGSMTWANDSQTLFFATLDDTHRPHK LLRHTLGETAAHEVFHEPDGRFFLHCYRSSSERQLILLLNSKTTSESWVLDADQPASPFHCLAPRVEGHDYSVDHGLYEGEWSWFIRTNQDGINFALYHA KGETPTRDDWTLLIAHDDAVMLEGLTLNAHALCLSLREGGLPIIEIRPSGLTPYRVQLPDAAYSLYVQDSLEFESPYIRLRYEALNRPAQVRQLTLSTGE QSVLKETPVLGPFNADDYVSQRLWATAPDGTRVPISLVVKRSALGQPTPLYMYGYGAYGESLDPWFSHARLSLLDRGVAFAIAHVRGGGELGEAWYRAGK QEHKHNTFSDFIACAEHVIAQGLTTAGQLVISGGSAGGLLIGAVLNQRPELFKAAIAEVPFVDVLNTMLDPDLPLTVTEYDEWGNPQEPDVYERIKAYAP YENVRAQAYPAMLVIAGYNDSRVQYWEAAKWVAKLRASKTDDNLLLLKTELDAGHGGMSGRYQALRDVALEYAFVFKVLGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|