Pseudomonas fluorescens AU12644, AA054_RS10380 (flhF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU12644 Contig_53, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAAGTGTTGCAGGCGCTGTTGGCCGAACAGGTGCCGGTGCGCGACATTCGCAGTATTGCCGAAGCCGTCGCGAACAATGCGCACAAGAGTCAAGATACC GCCGCTTTGGTGGCCGCCGTGCGGGTTGGTTTGTCCCGCGCCATCGTCCAAAGCATTGTAGGCGTTGAGTCTGAGCTGCCAGTTATCACGCTGGAGCCAA GGTTGGAACAAATATTGCTCAATAGTCTGCAGAAGGCAGGGCAAGGTCAGGAAGAGGGCGTTCTGCTGGAGCCGAGCATGGCTGAAAAACTGCAGCGTTC GTTGATCGACGCCGCACAACGCCAAGAGATGCAAGGCAATCCGGTGATCCTGCTGGTGGCCGGTCCGGTCCGCGCGATGCTGTCGCGGTTTGGCCGTTTG GCCGTGCCGAACCTGCATGTGCTGGCGTACCAGGAAATCCCTGACAACAAGCAAGTCACCATCGTTGCGACAGTAGGCCCGAACGGCTGAGGTTTGGTTT
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| DNA Sequence for Gene |
>AA054_RS10380
|flhF
ATGCAAGTGAAGCGTTTTTTCGCCGCCGATATGCGTCAGGCCATGAAACTGGTTCGTGATGAGCTGGGGGCTGATGCCGCCATTATTGGTAACCGCCGCA TTGCTGGCGGTGTTGAGTTGACCGCTGCGCTGGACTACAAGTTGTCCGCGCTGGCGCCCCGTGTGCCGAATGTCGAACTCGAAGAAGAGCTGCGCAAGAC CCAGTCGCGCATTGTGTCGGCCCAGGCCGAGTTGAGCATGCGCGCTGAGGGCGAGTCGGATGTCAGTCGGCAATTGTTTGCCGGTTTGCCCCTGACCGCC GCCGAGCCACTGATCGAGCCGACGTTCGACGAGCCGCCACGTCCCGCAGCCCCGGCCGCGCCGAGCATGGACCAACGCGCCTTCGACACCATGCGCTTTG AACTCAATGGCTTGCGCGAGTTGCTCGAAGTGCAGTTGGGTTCGTTGGCCTGGAATCAGTTGCAAGGCAGCAAACCGGCACAAGCCAATCTGTGGCGCCG TTTGCAGCGCATCGGCTTGTCCGGCCCGCTGGCCCGCGACTTGCTGGAGCAAGTGACCGAGATTGAAGAGCCGCGTCAGGCCTGGCGCATGCTGTTGGCC CATTTGGCCCGCATGATCGCCACCCCTGAAGTCGAACCGCTTGAAGACGGCGGCGTGATTGCCATGGTCGGCCCGGCAGGCATGGGCAAGACCACCACCC TGGCCAAGCTTGCGGCGCGTTATGTGCTCAAGTACGGCGCGCAAAACATTGCGCTGGTGAGCATGGACAGTTACCGGATTGGCGCGCAGGAGCAGCTCAA AACCCTGGGCCGCATCCTCAATGTGCCCGTCACGCACGTGGCGCCCGGCCAGTCGCTGGGGCAAACCCTGGAGCCGCTGGTGCGCAAGCGTGTGGTGCTG GTGGACACGGCGGGCCTGCAAGCCAGTGACCCGGCGTTGCGCCTGCAGCTCGAAAGCCTGGCGGGGCGCGGCATCAAGTCCAAAAACTATTTGGTATTGG CCACCACCAGCCAGAAACAAGTGCTGGCGGCGGCGTACCACAGTTATAAACGTTGCGGGCTGGCCGGTTGCATCCTGACCAAACTGGATGAGACGGCGAG CCTTGGTGAAGTGTTGAGTCTGGCCATCAGCCACGAGCTGCCAGTGGCCTATCTCACGGACGGTCCGCGTATCCCGGACGATCTCCATCTGCCGCGTCGT CACCAGTTGGTGAGCCGTGCGGTGAGTGTGCAAATGCAGGAAGAACCCAGCGAAGAGGCCATGGCCGACATGTTCGCTGATATCTACCACAGCCCTTCCA AACGGGTCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCAGTGATGATTACGTTGGAATGTACCTACATTGATGGTCTGCACATCCTGTTCCCGTTGAGGAACCCGCAGCCAGCCTCTGTAGCCGCGTCTAAGTAA GACAAGGTAAAGAAAGATCATGGGCAGCATGCATCCCGTACAGGTGATCGCAGTGACCGGCGGCAAGGGTGGCGTCGGTAAAACTAACGTTTCAGTCAAC TTGTCGCTGGCTCTTGCCGAGCTGGGCAGACGAGTGATGTTACTGGACGCTGACCTGGGGTTGGCGAACGTCGACGTACTGCTGGGGCTGACCCCCAAAT ACACCCTGGCCGATGTGGTCGAGGGCCGTTGCGAGCTGCGCGATGTGCTGCTGCCTGGCCCCGGCGGGATTCGCATCGTGCCCGCGGCGTCGGGCACCCA AAGCATGGTTCACCTGAGCCCGGCCCAGCATGCGGGGCTGATTCAGGCCTTCAGCGAGATCGGTGACAACCTGGACGTGCTGGTGATCGACACCGCCGCC
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| Amino Acid Sequence |
>flagellar biosynthesis regulator FlhF
MQVKRFFAADMRQAMKLVRDELGADAAIIGNRRIAGGVELTAALDYKLSALAPRVPNVELEEELRKTQSRIVSAQAELSMRAEGESDVSRQLFAGLPLTA AEPLIEPTFDEPPRPAAPAAPSMDQRAFDTMRFELNGLRELLEVQLGSLAWNQLQGSKPAQANLWRRLQRIGLSGPLARDLLEQVTEIEEPRQAWRMLLA HLARMIATPEVEPLEDGGVIAMVGPAGMGKTTTLAKLAARYVLKYGAQNIALVSMDSYRIGAQEQLKTLGRILNVPVTHVAPGQSLGQTLEPLVRKRVVL VDTAGLQASDPALRLQLESLAGRGIKSKNYLVLATTSQKQVLAAAYHSYKRCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPDDLHLPRR HQLVSRAVSVQMQEEPSEEAMADMFADIYHSPSKRVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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