Pseudomonas fluorescens AU12644, AA054_RS06540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU12644 Contig_51, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAATGGTCGGTGCGCAGTTTCTTCAGGCTTTCTTTCAGGCTCGGGATCAGTCTGTCCTGGCTGAAGTTATCGACCCAAATCTTGCTGGTGATGTACAGC GAGTCACGCGCCACACCGCTGTCGGCAATGGCTTGGCCCACATCCGCTTCGTTTTCGTAGATCTGCGCGGTGTCCACTGCGCGGTAACCCAGTTCAAGGG CGTTTGTGACCGAGTCGATGACCACTTGGCCTTTAAGTCGAAAAGTACCGAGGCCGAAGGCTGGAACTGTCATGGATAACTCCTTGGAGGTTGTAAGAAT GAGGCTGAGTATCCCTGTCCTTGCGGGTCTGAAAAACCCGTCCTGAGACAAAGCACTTGTGAGTTCAGGTCATGAATCACTGAGTGCGCTCACGCATAGG AGTTCCGGCTGCCGGATACGGGGCCACGGCCTAAATTTCGTCGGTGCACGCACGTTCTAGCTTGGATAACGCCTGCATTCAGGCTGGGACAGGTAGGGCA
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| DNA Sequence for Gene |
>AA054_RS06540
ATGACGATTTCTCGACGAGGGTTTATCGCGGGTTTAGCGATCACCGGCGCAGCGGCGCCAGCAGCGTTCTATGGCCATCGCGAGTTGACCCGGGTGGACG AGCCGGTCACCCCCGGCGAGGCAACGGTCGACCTCGCGGACACCGCCGGGCAGCAACTGGCTGACCAACTGCGTGGCCTGTGGACGATCCGCTTCAACGG CCGCGATGCCGGGCTGGACGGCTTGCCGTCCGATGACCTAGAAATGTGGCTGGACATCGCGCCGCGTGGGCGCGGGGTGCGCGGCTATCTGGACACGGCG CAGGTGTTGCACAGCCAGCAAACCCCGCGCTACCGCATTCTGGGCGACCTGGTTGAACCCGACGCCAAACACCTGCACTGGCGCCTGACGCGCAGCGATG CGCCTCATGGCGTGCCCGATTACGAGTTGAGTTTCAGCCTTGATGAAGTGTGGGGCATGTATGGCAACGCGGGCAGCGGCACGTTGAGTGGCCGGGTGCA GCGTCTGGATCGCCCGCTGGCATTGCCCGAGCAGGACAACCACGTTGTCGCGCTCAAACGCACCTTTCCTGAAGCCCGCGAGCGTATCGGCCTGAACCCG ACCTTGCTGGCGTGGCTGGTGTCCCCGGAACACCGTTTGTTTCACCAGCTTTGGCATGCCTCACGCGACACCTGGCACGACCTGTCCGAGACCAAGCGCA ATGCCTTGCGCGGCATTGGCTGGCAGCCCGGTCAGCGCGACAAGGAGCGCGACGCCCGCGGGCCACGCAAAGACCGCAATGGCTCGGGGGTGGATTTCTT TTTTATGCACCGGCACATGTTGCGCACGGCGCGCTCGATGCAGCATTTGCCCTCGTGGCCCGCGTTCCCGATGCCCCAGCCGGAGCTGGAGCGCGACCGC GCGGGGTTCGCCCGTTACTTTGACAACCACGACGGCAGCGCCTTGCCACCGACCTGGTTGGCGGAGGGTGATGAGTTCTACACCCAGTGGCTGAGTGATA TCAAACAGCCTGAGACCTTTCACAGTAATTTTGAGGTGTGGGAGTCGCGCTACCGTGACCCGCGTTACCTGTCGACATTGACCCTCGGCCAGTTTGGTTC CGAGGTTGAGCTGGGGCTGCATGACTGGCTGCACATGCGCTGGGCGTCAGTGCCGCGCGATCCTTCCAACGGCGCTCCGGTGCCCTGGGCGCGTGACCCT GCGGATTTTTCGGCGCGCTGGTACGTGCCTGAAAACGACTTTCTGGGCGATCCGTTTTCGTCCCACGTCAACCCCGTGTTCTGGTGCTTTCACGGCTGGA TCGATGATCGCCTGGAAGACTGGTTTCGCGCCCACGAACGCTTTCACCCTGGCGAACTGACGCGTAGGGAAGTCAACGGTGTGCCGTGGTTCGCACCGGG TCGCTGGGTCGAAGTCGACGACCCGTGGTTGGGGCCCATCACCCACGGGTGCAGCACCACGCCGGGGCTGGCGTCGGGCAAAACCGTGGAAATGGACCCT GAAACCATGAAACTGGCGTTACGCATTACCTTTGGGGATGAAAAGACCCTGGACAGCTTGTTCCGAAAAATTCCGCGCCGCCCCTGGTATGCGCGGCATC TGGTGACCAAGGCCCCGCACCGCGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCTGAAGGCGGGCGTATCCGATGGGGGACCGTGACGGGTAAGCGTCATGAATTCAACGGCCAGGGTCCCCGTTCATTTTGTTATACAAACCGGGTTGAG TTTCAGGAGGGCCAGGTCCTGGCAAGGCCGTTGCCCGATCAGGTACACATCGCCCAGGTAGCTGGTCAGGCAGGGCGCAGACACGAAGCGTCCTGCCGTT TGCGAGTAGATATCCACATCGAGATACGGACGAAACGTTTCAACGGTGTATTGGTTGCCCGACCGTTTGCGGGTGGCGCAATAAAAGTATTCCCCCTGGG TATGCAGCGCGGAGGCGCCATAGGTGTCCGGTTGGTTGGACACATGGATCGGGTACTCCTCATCGATCAGTTGAAAGGTGACCAGTTGCCCGGTGGCACT TCGGGTTGAAACGAAGGGCATGTCTTTATGGATACACAGGGAAGGACTTTCGACGACGCTTTTGTGGTCTTCGCGTACGTGGGGTTGCCAGCCGGAAGGC
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| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MTISRRGFIAGLAITGAAAPAAFYGHRELTRVDEPVTPGEATVDLADTAGQQLADQLRGLWTIRFNGRDAGLDGLPSDDLEMWLDIAPRGRGVRGYLDTA QVLHSQQTPRYRILGDLVEPDAKHLHWRLTRSDAPHGVPDYELSFSLDEVWGMYGNAGSGTLSGRVQRLDRPLALPEQDNHVVALKRTFPEARERIGLNP TLLAWLVSPEHRLFHQLWHASRDTWHDLSETKRNALRGIGWQPGQRDKERDARGPRKDRNGSGVDFFFMHRHMLRTARSMQHLPSWPAFPMPQPELERDR AGFARYFDNHDGSALPPTWLAEGDEFYTQWLSDIKQPETFHSNFEVWESRYRDPRYLSTLTLGQFGSEVELGLHDWLHMRWASVPRDPSNGAPVPWARDP ADFSARWYVPENDFLGDPFSSHVNPVFWCFHGWIDDRLEDWFRAHERFHPGELTRREVNGVPWFAPGRWVEVDDPWLGPITHGCSTTPGLASGKTVEMDP ETMKLALRITFGDEKTLDSLFRKIPRRPWYARHLVTKAPHRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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