Pseudomonas fluorescens AU12644, AA054_RS16620

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU12644 Contig_48, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGACGGGCAAAACATTCGCTTGCCGGGCTACATCGTGCCCCTTGAAGTCAATGAAGAAGGCCGCACGACGGAGTTTTTGCTGGTGCCGTATTTCGGCGCC TGCATCCATGTCCCGCCACCGCCCTCGAACCAGATCGTGCACGTGACCAGTCACGTCGGGGTCAAACTGGACGAGCTGTACCAGCCGTACTGGATCGAAG GCGCATTGCAGGTCAAGCCAAGCAGCAGTGAGCTGGCCGATGCGGGGTATCAGATGGACGCGCAGAAGATCTACGTTTACGAGTTACCGGAGTAACCGCC GGGGGCCACGCTGCCCCGGCGTCGGAGCCGCCTGATGGCAGGCCACGACCGCGAGTAAAGAGTCCGTGTTTGCGGGTTAGTTCACGAAATTTTCACAATT TTTCAGCGCATCGTCGTTTCATTGAGCTGGGTCAACAGAGTGGCTCGGAGCGCTCATTACCATTGGTTATATAAATTTTAAATATCCAATTGGAGCTCCC
DNA Sequence for Gene
>AA054_RS16620
ATGCACAAGTCTTTGCTCAGCGCAGCGGCACTTGCCCTTGCCGTCGTTGCCCCGCTTGCCCACGCGCACACTGAAGGCGACATTATCGTCCGTGCCGGTG CCATCACGGTTAACCCGAAAGCCGACAGCTCCAGCGTAAAAGTGGACCAGGGTCCGCTGGCGGGTGCTGATCTGGGCGGCAAGGCAACCATGAGCAGCGA CACCCAATTGGGTCTCAACTTTGCCTACATGGTCACCAACAACATCGGTATCGAGTTGCTGGCCGCCACTCCGTTCGAACACGACGTGAAAATCAAAGGC ACCGGCCTTGATGCCGCCAACGGCAAACTGGGTTCCCTCAAGCACTTGCCGCCAACCCTGAGCGTTGTGTACTACCCGCTGGACTCCAAGTCCGCGTTCC AACCGTACGTGGGTGCCGGTATCAACTACACCTGGATTTACGACGAGCACGTGGGCAGCCGCGCCAACGCTGCGGGCTTCGATAACTTCAAAGCGAAAAA CTCGTGGGGCATGGCCTGGCAGATCGGTGCTGACTACATGCTGACCGACAACATCATGATCAACGCCCAGGCGCGCTACATCGACATTGATACCCGCGCG ACCGTGGAAAACAACAGCGTTGCGCCAGGCACTCGCGCCAAGGTCAACGTTGACGTCGATCCATGGGTTTACATGGTTGGCTTGGGTTACAAGTTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAATAGCCGAACCTAAAAAGGCGCCTTTCGAGGCGCCTTTTTCATGTGCAGCGTTTATTAGCGACCCAACAAACGCGCCAGGCCTTCACTCATGGGCGT GGTCTGGCCCAGTGTGAAACGGTCTAACAGGCGGCTGTTATCGGCACGCGAATGCCGAATGTCACCGGAGCGCGCCGGGCCATAGCTGATCGGTGGCAAC TCACCGACCACTTCACTCAGGGCGGCCAGCATTTGCTTGAGGGTCGTGGCTTGGTTCAGGCCCACGTTGACCGCGCCTTCTTCCACGTGTTCGGCTTCGA CTGCCTGCACCAGAATCTTCACCAAATCGCCCACATACACGAAGTCGCGGGTTTGTTCGCCATCGCCAAAGATAGTGATGGGCAGGCCTTTTTCAGCGCG CTCACTGAAAATGCTGATCACACCCGAGTACGGCGAGGACGGGTCCTGACGCGGCCCGAAAATGTTGAAGAAGCGGAAAATCACGGGCTCCAGACCGTGC
Amino Acid Sequence
>membrane protein
MHKSLLSAAALALAVVAPLAHAHTEGDIIVRAGAITVNPKADSSSVKVDQGPLAGADLGGKATMSSDTQLGLNFAYMVTNNIGIELLAATPFEHDVKIKG TGLDAANGKLGSLKHLPPTLSVVYYPLDSKSAFQPYVGAGINYTWIYDEHVGSRANAAGFDNFKAKNSWGMAWQIGADYMLTDNIMINAQARYIDIDTRA TVENNSVAPGTRAKVNVDVDPWVYMVGLGYKF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site