Pseudomonas fluorescens AU12644, AA054_RS14575
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU12644 Contig_34, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGACATTTCAAGGCTGAGCCAGATGCCTTGGCTGTCTTCGTGGCAGTCAAGGCCGGTTAGATATTGCCCGGCGCAAGGCCCGGCCACGCACTCGCCGGA CTCGATCAAGAACAGGGCCGCATGGGTGGCGCATTTAATCAGGCTGGTGCTGTCGTCGAGAAACTGGTCGGGCTGCCACTCCAGGCGGACACCCCGGTGC GGGCAGCGGTTTTTGTAGGCATAGACCCGGCCCTCACGTCGCACGACAAGCACGTCTGATTCGTCTATTTGAAAGCCGCGACTGTTGCCTTCTTTCAAGT CCTCAGAGGGGCATAACCACTTCATGGCAATCCTTAATGGCTGCTGATACTCGCGTAGATGACGCGGGTGACAGGGTGTTTATAGGTTGACGTGCAAATG CAAACAATTATCAAATGGCTGGCTGCTCCGCGATCTGCTGTGTCCACGGCGCGGGATTTTACTGTTCCCGCTGACCCACTTATTAAAGGAACGCCTTTGT
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| DNA Sequence for Gene |
>AA054_RS14575
ATGCGCTTGCGTCTTCGCCTGATTACGCTCTTTGCTGGCCTTGTGATCAGTACTGTCAGCTCGGCTGCCGAGTTGCCACACCGTTGGGTCAGTGCCGGTG GGGCACTCTCGGAATGGGTCTGCGCGCTGGGGGCGGAGTCTAAATTGGTTGGGGTCGATACCACTAGCCAACATCCTGAATCACTTAAATCCCTGCCCAG CATCGGCTATCAGCGTCAGCTGTCGGCAGAGGGCATCCTGAGCCTCAGGCCTGATGTGTTGATCGGCACGCAAGAGATGGGGCCCGCCAAGGTCTTGAAG CAGATTCAAGCGGCCGGGGTGCCGGTTGAAATGTTCTCGGCGCAGGCTGATCTGACGACCCTGCAAGCGACGCTGACGCATTTAGGGCGATTACTTGGCG ATACAGCGCACGCCAAGGACGTGTTTGACCGTTTTAAGCAGCAAATGGATCAGCAGCAGGCTCAGGTCAAGCACTTGCAAGCAACGCACAAAACGCCGGG CGTCCTGTTGTTGCTGGGTCATGCGGGTGGCAAACCGATGATTGCCGGTAAGGACACCGCTGCCGATTGGTTGCTGACGCAAGCCGGCGGCCGAAACCTT GCCACCCATTCAGGCTACAAGCCTTTCTCGGTCGAGGCGTTGGCGGGGCTGAACCCGGAGGTTCTGGTGTTTGCAGATCGCAGTCTGAGCGGTGAGGCCG CCCGTACAGCCCTGTTGAAAGAAAACCCGGTGCTGGCATCGATTCGCGCAGTCAAAGCAGGGCGGCTCTATGAAGTGGACCCAACCTTGTTGGTCGGCGG GCTGGGGCCGCGGTTGCCGGAGCGTCTCAAGCAACTCACGGTTGAGTTTTATCCCGAGGCCGCAGCCGCTCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAACGCTGGTAAAGCCCCGTTCTTTGTTTATTGGTTTGACCCTCTTGTGCCTGCTGGCGACCTGGTTGTCGCTGGCGCTTGGGCCAGTGAGTTTGCCGCT GTTCGATACGTTGCGCGCAGCCATGCGGTTGATGGGGTTGTCGGTACAGGGGGAAGGTCTTGAACAGGCAGAGTTGATTCTCGGGCAGATCCGCTTGCCG CGAACCTTGCTTGGGCTGGCGGTCGGCGGTGTTCTGGCGCTGTCGGGCGTTGCGATGCAGGGCTTGTTCCGCAACCCGTTGGCCGACCCCGGTCTGGTCG GGGTCTCCAGCGGTGCAGCCCTCGGAGCGGCGATTGCCATCGTAGGCGGCGCTGCCTTGGGTGGGTTGCCTGACTTCATCGGGCCGTACTTGCTGTCGCT CTGTGCGTTTTTGGGGGGCTTGGGAGTCACTGCGCTGGTTTACCGACTGGGGCGGCGAAACGGCCAAACCCATGTGGCCGTGATGTTGCTGGCGGGGATC
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| Amino Acid Sequence |
>ABC transporter substrate-binding protein
MRLRLRLITLFAGLVISTVSSAAELPHRWVSAGGALSEWVCALGAESKLVGVDTTSQHPESLKSLPSIGYQRQLSAEGILSLRPDVLIGTQEMGPAKVLK QIQAAGVPVEMFSAQADLTTLQATLTHLGRLLGDTAHAKDVFDRFKQQMDQQQAQVKHLQATHKTPGVLLLLGHAGGKPMIAGKDTAADWLLTQAGGRNL ATHSGYKPFSVEALAGLNPEVLVFADRSLSGEAARTALLKENPVLASIRAVKAGRLYEVDPTLLVGGLGPRLPERLKQLTVEFYPEAAAAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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