Pseudomonas fluorescens AU12644, AA054_RS06095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU12644 Contig_28, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCATCATCGACCAGGGCGGTGCCGAGCAACTGCTGGGGCACGGTGACATGCTCTACATGCCGCCTGGCACTAGCTTGCCGATTCGCGTGCATGGCGCG TTTGTGTCCGACGAAGAAGTGCACCGTGTGGTTGAAGCCTGGAAGCTGCGCGGCAGCCCGGATTACAACGACGACATCCTCAGCGGGGTGGAAGAAGCAG GCAGCGGCTTTGAGGGCGGTGGTAGCGAAGGCGGTGATGATGCAGAAACCGACGCCTTGTATGACGAAGCTGTCCAGTTTGTACTGGAAAGCCGTCGCGC CTCTATTTCAGCCGTTCAGCGAAAATTGAAAATCGGCTACAACCGCGCGGCCCGCATGATTGAATCCATGGAAATGGCCGGGGTTGTAACCTCCATGAAC ACCAATGGCTCGCGTGAAGTTCTGGCGCCGGCCCCACTACGCGACTGATCGGCCCGTGGCGCACTCGCGGGCCGGGTTTAACTAATCAAAGAGGGTTTTC
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| DNA Sequence for Gene |
>AA054_RS06095
ATGCGTTTTTTCAGCATGCTGTTGCTACCGGTTCTGGCTATGTCTTCTCTTGCGGCTCATGCCGGCGAACAGGACGTAAAACGGTTAGGCCAACTGTTGG GACAGTCCAATACCATCTCGGCCCGTTTCAGTCAGTTGACGCTGGATGGCAGCGGCACTCAATTGCAGGAAACGGCCGGTGTCATGTCGGTCAAGCGCCC GGGGCTGTTCTACTGGCACACCGATGCGCCTCAAGAACAGACCATGATCTCGGATGGCAAGAAAGTCACTCTTTGGGACCCGGACCTGGAGCAGGTGACC ATCAAGAAGCTGGATGAGCGTTTGAACCAGACCCCTGCTTTGCTGTTGTCGGGAGACGTCTCAAAAATTGATCAGAGTTTTGACGTCACCTCCAAGCCGT CAGGAGAGGTGTTGGAGTTCATGTTGAAACCCAAAACCAAAGACACCCTGTTCGACTCGCTCAGGTTGTCTTTCCGCAACGGCAAGATCAACGATATGCA ATTGATCGACAGTGTCGGTCAGCGCACCAATATCCTGTTCAGCGGGGTGAAGGTGAATGAAGACATTCCTGCCAGCACATTCAAGTTTGTCGTGCCCAAA GGTGCTGATGTCATCCAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCACTGTGCCGATCGGGCGGTGACGCGCGGCTAGTATTTTTCTGGCCGTGCCAGAGCGGTTTTTTCGCGCAGTCAGCGCCCCCGTGGCAGGGCGTGAGC ATCGCCATGGCATTGGCCCGCAGCACACACGTGAGGTTGTTTAAACAGTGATGGACCTGTTTCGAAGTGCACCAATCGCTCAGCCTCTGGCAGCCCGTTT GCGCGCCGCCAATCTGGATGAGTACGTGGGCCAGCAACATCTGTTGGCCCGCGGCAAGCCCCTGCGTGAAGCGCTGGAACAGGGCGCGTTGCACTCGATG ATCTTCTGGGGCCCGCCGGGCGTGGGCAAAACCACATTGGCGCGGTTGCTGGCGCAAGTGTCTGACGCGCACTTTGAAACCGTGTCAGCGGTGCTGGCGG GGGTTAAAGAGATTCGCCAGGCCGTGGAAGTGGCCAAGCAACAGGCCGGTCAATATGGCCGTCGCACCATCCTGTTCGTCGATGAAGTCCACCGTTTCAA
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| Amino Acid Sequence |
>membrane protein
MRFFSMLLLPVLAMSSLAAHAGEQDVKRLGQLLGQSNTISARFSQLTLDGSGTQLQETAGVMSVKRPGLFYWHTDAPQEQTMISDGKKVTLWDPDLEQVT IKKLDERLNQTPALLLSGDVSKIDQSFDVTSKPSGEVLEFMLKPKTKDTLFDSLRLSFRNGKINDMQLIDSVGQRTNILFSGVKVNEDIPASTFKFVVPK GADVIQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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