Pseudomonas fluorescens AU12644, AA054_RS05900
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU12644 Contig_28, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCACGCTATTGAGTACTTCTTCAGGACTAAAGGCTGGAGAAGTTGTATGTAAAAAGTCCGATAGTGTTGTGATATCAACGATTGACTATGATATTGAGC TTTATTTTGACAGATTAGATTCGTTATTAGAGTCATGTCGAGAAAATGATGTGAGCTCAGTCCGTAGACTGATATCCAATTGTGCTGGCTACAATGATGC AGGCAGTCATGGATGGACACCTTTGATTGTGGCTTGTTACGCTGGGTCTTTAGAAGTAGTCAAATATCTTGTTGGGCTAGGTGCTGATGTAAACAGATCC AATCGCAAAGGTACGACGCCGTTAATGTATGCCAAAGATGCTTATTTTTCAGGGCGCTGTAAAAAAATATTCACTATATTAGTCAAGCATGGTGCCGATC TTGAGCATAGAGACGCAGCAGGCAAAAAATTAAAAGAATATGTCTCAACTGCTCAGTACAAAGAGCTGTTGGTTAGTTTGACGCACGCGGGTGACTTGTA
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| DNA Sequence for Gene |
>AA054_RS05900
ATGATACCTTTTCTCGATTTGAAACAAATAAATAAAGTATTTAGTGAAGAGCTTCTCGCCGCCTGTAAGCGCGTAATTGATTCGGGTTGGTATATTGGAG GTGCGGAGCTTCTTTCTTTTGAAACGGCGTTCGCTGATTATTGTGGGGTTAAACATTGTGTGGGAGTGGCCAATGGTCTCGACGCGCTCGTATTGACCAT TAGGGCTTGGAAGGAACTTGGGAAACTGACAGATGGCGATGAAGTCATTGTGCCCTCGAATACTTATATAGCTAGCATTTTGGCAATCAGCGAGAATGGA TTGACACCAGTATTGGTTGAACCAAATCCCAGTACTTATAATCTATGCCCTGAAAACACCAGGCAGGCAATCACGCCCAGGACCAAAGCCATTTTGCCCG TGCATTTATACGGGCATTTAGCTGATATGCCTGCTTTCATGCAGATCGCCGAAGAACACAATTTGCTTGTTCTTGAAGATTCTGCTCAAGCCCATGGGGC AAGTTTGCATGGAAAAAAGGCAGGTAGTTGGGGACATGCCTCAGGCTTCAGTTTCTACCCAGGAAAGAATTTGGGCGCTTTGGGGGATGCGGGTGCTATC ACTACCAATGATGATGCGTTAGCTGACACACTAAGAGCGCTTAGAAACTACGGATCTCAAGAAAAATATAAAAACTTATACAAGGGTGTGAATAGCCGTC TGGATGAAATTCAGGCTGCGATGCTAAGTGTTAAGTTGAAGTACCTCGATGCGCAGACTGCACATAGACAACTCATCGCCTCTCTGTATCTGAATGAAAT TAAAAATCCGGAAATCAGTTTGCCTGGCGTGGACGTGTCGAACCAGGTTTGGCATCTATTCGTCATCAGGACTAAACACCGGGCAGCGTTGCAACACCAT TTGCAAGAACATGGCGTGCAAACGTTAATTCATTACCCGATAGCACCTCACAAGCAAGATGCTTATAAGGAGTTTGCGCACCTCCAACTGCCCGTGAGTG AACAACTGCACGCTGAAGTGCTAAGTTTGCCTATTGGTCCTGAGTTAAGTTCCGAAGAAGCACGTCATATTGTGTCAGTCTGCAATAGCTTTAGCGTCAA ACATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTATGACCCTAATTAAAACCAGCCTGCTCAATGCGATTGCAGTCATCATAAAAATGCTCACCTTGTTGGGGATCAATAAGGTGCTTGCCGTGTACGTTGG TCCTTCTGGATATGCAGCGATAGGGCAGTTTCAAAATGCTGTACAGATGATTACCGCTTTTTCCAGTGGAGCAATCAATACTGGCGTTACAAAATATACT GCCGAATACCAAGGCGATATTGAGTTGACACGCCGGTTATGGAAAACGGCAGGCATGATTGTGATCTGTGCCTCTACTGCAGTCGCACTCTTGGTTGCCA TTTTTTGTGTTCCGCTTGCACGCTATTTTCTCAATGATGTGACGTTGTCTGGTGTATTTCTCTGGTTTGCAGCGACCTTGGTATTATTTACATTCAATGC CTTGCTACTCGCTATTCTTAATGGAAAAAAAGAAATCCATAGTTATGTATTGGCCAACATTGCAGGGAGTATATTTTCTTTAGCCGTAACCGTGTTAATG
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| Amino Acid Sequence |
>aminotransferase
MIPFLDLKQINKVFSEELLAACKRVIDSGWYIGGAELLSFETAFADYCGVKHCVGVANGLDALVLTIRAWKELGKLTDGDEVIVPSNTYIASILAISENG LTPVLVEPNPSTYNLCPENTRQAITPRTKAILPVHLYGHLADMPAFMQIAEEHNLLVLEDSAQAHGASLHGKKAGSWGHASGFSFYPGKNLGALGDAGAI TTNDDALADTLRALRNYGSQEKYKNLYKGVNSRLDEIQAAMLSVKLKYLDAQTAHRQLIASLYLNEIKNPEISLPGVDVSNQVWHLFVIRTKHRAALQHH LQEHGVQTLIHYPIAPHKQDAYKEFAHLQLPVSEQLHAEVLSLPIGPELSSEEARHIVSVCNSFSVKH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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