Pseudomonas fluorescens AU12644, AA054_RS14380 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU12644 Contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGCGCTACCGTGAGTTGGCGCGCGGTGTTCACCCGGATCGCTTTGCTGATGCTTCCGAGCGGGAGCAGCGCATGGCGCTGGAGCAGTCAGCCAGCCTTA ACGAGGCCTATCAGACACTCAAAAGCCCATCCAGGCGCGCGCGTTATTTGCTCGAACTCAAGGGTAATAACGTGCCTCTGGAAGCAACGGTGCACGATCC TGAGTTTTTGATGCAGCAGATGCAGTGGCGCGAAGAACTTGAAGACTTGCACGACACCGCCGACATGGCAGGTATTGCAGCTTTCAAGCGTCGACTGAAA GACGCTCAGCAAGCCTTGAACGACAGCTTCGCTGCTTGTTGGGATGATGTTGCGCAGCGTGAACAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCG ACAAGCTCACTTACGAAGTGCGCCAGCTAGAAGAGCGCCTCGACGATTAACTCCGTGCTTTTCCGATTGCACGCCTGATTACAGATAAGTCCTGATAACG
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| DNA Sequence for Gene |
>AA054_RS14380
|hscA
ATGGCCCTACTGCAGATCGCCGAACCCGGCCAAAGTCCTCAACCGCACCAGCGACGTCTGGCTGTGGGGATCGACTTGGGCACCACCAATTCGCTGGTTG CTGCGTTGCGCAGTGGCCTTTCCGAGCCTTTGGCTGACGCAAGTGGCAATGTCATTTTGCCCTCAGCCGTGCGTTATCACCCTGACCGCGTAGAGGTGGG TGAATCAGCGCGCCTGGCGGCTTCTGCCGATCCGTTCAATACGGTGTTGTCGGTCAAGCGCCTGATGGGGCGTGGTCTGTCCGACGTCAAGCAACTGGGC GAGCAACTGCCTTACCGCTTTGTGGGCGGTGAGTCGCATATGCCGTTCATCGATACGGTTCAAGGGCCCAAAAGCCCGGTCGAAGTATCGGCGGAAATCC TCAAGGTATTGCGCGAGCGTGCCGAGAAAACACTGGGTGGTGAATTGGTCGGTGCCGTGATTACGGTACCCGCTTATTTTGACGACGCTCAGCGTCAGGC GACCAAAGATGCGGCCAAGCTGGCTGGTCTTAATGTGTTGCGTTTGCTCAATGAACCGACGGCTGCTGCGGTGGCTTACGGTCTTGACCAGTCTGCTGAA GGTGTTGTCGCTATCTATGATCTGGGCGGCGGCACGTTTGATATTTCAATCCTGCGCCTGACCGGCGGTGTGTTCGAAGTGTTGGCGACCGGCGGCGACA GCGCGCTGGGGGGTGACGATTTCGACCATGCGATCGCCAGTTGGATAGTCGAGCAGGCAGGGTTGTCGGCTGATCTGGACCCTGGCACTCAGCGTCAACT GCTGCAAAGCGCCTGCGCGGCCAAGGAAGCGCTGACGGATGCATCGAGCGTGACGGTTATGTTTGGACAGTGGTCTGCCGAGCTGACCCGCGCAAGGCTC GATGCGCTGATCGAGCCAATGGTCGCCCGCAGCCTCAAAGCCTGTCGCCGAGCCGTGCGCGACGCCAATATCGAAGTCGAAGATGTGCAGGCCGTGGTCA TGGTGGGTGGATCGACGCGCGTCCCTCGGGTGCGCGAGGCAGTCGCCGACATGTTTGGCCGTCAGCCGTTGACTGACATCGACCCGGATCAAGTGGTTGC CATTGGGGCAGCGATTCAGGCCGATACGCTCGCGGGCAACAAACGTGAGGGGGGGGAGTTGCTCCTGCTTGACGTGATCCCGTTGTCGCTCGGTCTTGAG ACCATGGGTGGCCTGATGGAGAAAGTCATTCCCCGCAACACCACGATCCCCGTCGCGCGAGCTCAGGATTTCACCACTTACAAAGATGGCCAGACGGCCA TGATGATCCACGTCCTGCAGGGTGAGCGCGAGCTGATCAGCGACTGCCGTTCGTTGGCGCGTTTCGAGTTGCGTGGCATACCGCCGATGGTCGCAGGTGC CGCCAAAATCCGCGTGACTTTCCAGGTGGATGCCGACGGTTTGCTCAGCGTGTCAGCCCGTGAAACGGGATCGGGCGTTGAAGCCAGTATTCAGGTCAAG CCGTCCTACGGCCTGACGGATGGTGAAATCGCCAAAATGCTCAAGGATTCGTTCCAGTACGCGGGTGACGACAAAGTGGCTCGCGTGTTGCGTGAGCAAC AAGTCGATGCGCAGCGCCTGATCGAAGCCGTGCAAGCCGCGCTGGAGGTGGATGGTGACCGTCTGCTTGATGCTGAAGAGCGCAAGGTGATCGAGCTGCA CATGCAGCAATTGTCCGAATTGTTAAAAGGCACCGATGGTTACGCCATTGAGCAGCAGACCAAGCGTCTGTCGCACGTGACCGATGCCTTTGCTGCCCGG CGTATGGACCTGACTGTCAAGGCGGCTCTGGCCGGGCGCAACCTGAATGAAATCGAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGATGCCGCAGATCATTTTTCTGCCACACGCCGAGCATTGCCCGGACGGTATGGTTGTTGAAGCCGAGACCGGTAAGTCGATCCTCGAAGTGGCGCATG ACAACCACATTGAGATCGAAAGCGCCTGCGGTGGCGTCTGCGCCTGCACCACTTGCCACTGCATCATTCGCGAAGGGTTTGATTCGCTGGAAGAAGCTGA CGAGCTCGAAGAAGACTACCTTGATCGCGCGTGGGGCCTGGAGGCACACTCGCGTCTGAGCTGTCAGGCCAAGGTCGGGACCGAAGACCTGACGGTCGAA ATCCCGAAGTATTCGCTTAATCATGCTGCCGAAGCGCCGCACTGATTTGATCGCTGCCGGGGTGCGCTGGCTGATTCGGGTCATTCCCTCTTTTCAGCCG CGCCAAGGTTCTGAGCGGTATAAGACTCTGCTTTTAAAGGAAGTGTCATGAGCCTTAAATGGGTTGATGTACAGGAAATCGCGATTCAGCTGGCTGAGGC
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| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGLSEPLADASGNVILPSAVRYHPDRVEVGESARLAASADPFNTVLSVKRLMGRGLSDVKQLG EQLPYRFVGGESHMPFIDTVQGPKSPVEVSAEILKVLRERAEKTLGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLDQSAE GVVAIYDLGGGTFDISILRLTGGVFEVLATGGDSALGGDDFDHAIASWIVEQAGLSADLDPGTQRQLLQSACAAKEALTDASSVTVMFGQWSAELTRARL DALIEPMVARSLKACRRAVRDANIEVEDVQAVVMVGGSTRVPRVREAVADMFGRQPLTDIDPDQVVAIGAAIQADTLAGNKREGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARAQDFTTYKDGQTAMMIHVLQGERELISDCRSLARFELRGIPPMVAGAAKIRVTFQVDADGLLSVSARETGSGVEASIQVK PSYGLTDGEIAKMLKDSFQYAGDDKVARVLREQQVDAQRLIEAVQAALEVDGDRLLDAEERKVIELHMQQLSELLKGTDGYAIEQQTKRLSHVTDAFAAR RMDLTVKAALAGRNLNEIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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