Pseudomonas fluorescens AU11164, AA046_RS21480
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11164 Contig_38, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGAACCGGACGGTGAAGTCAGCATCGTGCTGGGGGCTCACCACATTCGCGCAACAACCGGTGAATTCACCTTCACCTCCAAACTGGTGGACGGTAAGTT CCCGGACTACGAGCGCGTGCTGCCTAAAGGCGGCGACAAAACCGTTATCGGTGATCGTCAGGCCTTGCGTGAAGCGTTCAGCCGCACTGCGATTCTGTCC AACGAGAAATACCGCGGTATTCGTCTGCAACTGGCCAATGGCCAACTGAAAATCCAGGCCAATAACCCGGAACAGGAAGAAGCGGAAGAAGAAGTGGGCG TTGACTACAACGGCGGCTCGCTGGAGATCGGCTTCAACGTGAGCTATCTGCTGGACGTGCTGGGCGTCATGACCACTGAGCAAGTGCGTCTGATCCTGTC GGACTCCAACAGCAGTGCGTTGGTGCAAGAATCGGACAACGACGATTCGGCCTACGTTGTCATGCCGATGCGTCTGTAACTTATGCACAGCCTGCACTAG
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| DNA Sequence for Gene |
>AA046_RS21480
ATGTCCCTCAGTCGTGTCACAGTCACCGCGGTGCGTAACTTGCACCCGGTGACGTTCTCCCCTTCCCCCCGCATCAATATCCTGTACGGCGACAACGGCA GCGGTAAAACCAGCGTGCTGGAAGCTATCCACTTGCTGGGGCTGGCCCGTTCGTTCCGTAGCGTGCGCCTCAACCCCGTTATTCAGCATGAACAACAGAC CTGCACCGTCTTCGGCCAGGTTGAGTTGGCTGAAGGTGGCCACAGTGCGCTGGGCATCTCACGCGACCGGCAGGGGGAGTTTCAAATCCGTATCGATGGC CAGAATGCGCGCAGTGCGGCGCAATTGGCCGAGATATTACCGCTGCAATTAATTAACCCGGACAGCTTCCGTCTACTGGAAGGCGCCCCGAAGATCCGTA GGCAGTTTCTGGATTGGGGAGTGTTCCACGTCGAACCGCGCTTCATGTCGACCTGGCAGCGGCTACAGAAGGCCCTGCGGCAGCGGAACTCATGGCTGCG GCATGGTACACTCGACGCCGTTTCACAAGCGGCCTGGGACCGGGAACTGTGTCTGGCCAGTGCTGAAATCGATGAATACCGACGCGCCTATATCAAAGCC TTGAAACCAGTCTTTGAGCAGACCCTGAGCGAGTTGTTGGAGCTCGAAGGGTTAACGCTGAGTTATTACCGTGGGTGGGACAAAGACCGTGAGCTGAGCG CTGTGCTCGCCGCATCCGTCCACCGCGATCAGCAAATGGGTCATACCCAGGCGGGACCGCAACGTGCTGATTTACGCCTGAAGCTGGGCGGCCACAACGC CGCAGAAATCCTCTCGCGCGGGCAGCAAAAGTTAGTGGTCTGCGCTTTGCGAATTGCTCAGGGGCATTTGGTCAGTCAGGCACGGCGCGGCCAATGTATT TATCTGGTGGACGATTTGCCGTCTGAACTCGACGAGCAGCATCGCCACGCACTGTGTCGCTTGTTGGAAGACTTACGCTGCCAGGTGTTCATCACCTGTG TAGATCACGAATTATTGAGGGAAGGCTGGCAGACGGAAACGCCAGTTGCACTGTTCCACGTGGAACAGGGCTGTATCACCCAGACCCACGACCATCGGGA GTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGCATTGAGCGAAGAAAATACGTACGACTCAACGAGCATTAAAGTGCTGAAAGGCCTGGATGCCGTACGCAAACGTCCCGGTATGTACATTGGTGACAC CGACGATGGCAGCGGTCTGCACCACATGGTGTTCGAGGTGGTCGATAACTCCATCGACGAAGCGCTGGCTGGCCATTGCGACGACATCACCATCACCATC CACCCGGATGAATCCATCACCGTGCGCGACAACGGTCGTGGCATTCCGGTCGATGTACACAAAGAAGAAGGCGTTTCCGCAGCTGAAGTCATCATGACGG TGCTGCACGCTGGCGGTAAGTTCGACGACAACTCCTATAAAGTCTCCGGCGGTCTGCACGGTGTAGGTGTGTCGGTGGTTAACGCCCTGTCCGAAATTCT GGTGCTGACCGTACGTCGCAGCGGCAAAATCTGGGAACAGACCTACGTTCACGGTGTGCCTCAGGCGCCGATGGCCATCGTCGGTGAGAGCGAAACCACC
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| Amino Acid Sequence |
>recombinase RecF
MSLSRVTVTAVRNLHPVTFSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSVRLNPVIQHEQQTCTVFGQVELAEGGHSALGISRDRQGEFQIRIDG QNARSAAQLAEILPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALRQRNSWLRHGTLDAVSQAAWDRELCLASAEIDEYRRAYIKA LKPVFEQTLSELLELEGLTLSYYRGWDKDRELSAVLAASVHRDQQMGHTQAGPQRADLRLKLGGHNAAEILSRGQQKLVVCALRIAQGHLVSQARRGQCI YLVDDLPSELDEQHRHALCRLLEDLRCQVFITCVDHELLREGWQTETPVALFHVEQGCITQTHDHRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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