Pseudomonas fluorescens AU11164, AA046_RS02350
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11164 Contig_26, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTGGCAGCGACAACGTGTCCATCGAGTACAAGGAATTCGGGATCCGCCTCACCCTGACCCCCACGGTGGTCAGCCGTGATCGCATCGTGCTCAAAGTCG CGCCCGAAGTCAGCGAGCTGGACTACACCAACGCCGTGAACATCGCAGGCACGCTGGTCCCCGGGCTTAAGGTGCGCCGCACCGACACCAGTATTTCCCT GGCTGACGGTGAGAGCTTTGTCATCAGTGGCCTGATCAGTACGCGCAATAGCTCACAGGTCGACAAATTCCCCGGCTTGGGCGATATCCCGATTCTCGGG GCGTTTTTCCGCTCCTCCAACATCAGCCGCGAAGAGCGCGAGTTGCTGATGATCGTCACCCCGCACCTGATCCAGCCGCTGGCGGCCACTGCCCAGTTGC CTTCATTGCCCGGAGAAAAGCTGCGCAATTACGACCCCAACTGGTATCGCCTGTATTTTCTCGAAAACGGCAATTTCAATCGCCGTAGCGGGTTATCCAA
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| DNA Sequence for Gene |
>AA046_RS02350
ATGAGCCAGGGACTGAGCCAGACATTTCTCGCGTTAACGCGCAACAACACCGACCTTGAATGGTTGCAAGGCGCGCTGGCGCCCATCGGCCAAGTGGTGG GCGCCAGCACTGGCAGCCTGGATGAGTTGTTGGCGCTGGTGGACGTGACCTTCGCCGGGCTGGTGTTCGTGGGGCTGGACCGCGAGAAAGTGGTCGCTCA GTGTGCCTTGATTGAAGGCGCGCTGGAAGCCAAGCCGATGCTGGCCATCGTGGCCCTGGGCGATGGCATGGACAACCAGTTGGTGCTCAACGCCATGCGC GCCGGGGCGCGGGATTTTGTCGCGTATGGTTCGCGCTCCAGCGAGGTGGCCGGGTTGGTCCGACGCCTGAGCAAGCGCCTGCCTGCCGTCACGCCCAATG CACAATTGGGCGGCCTGACGGTGATGTACAGCGCGCAGTGCAACGCCGATGGCGCCTTGCTGACCAGCCACTTGGGGCTCGTGGTGCAAAAGAGCGACCA GCAAACCCTGCTGCTGGATTTGGGCCTGCCCCGTGGCGACAGTCTCGCGCTGTTGGGGCTGCAAAGCGCGTTCTACTTCGGTGATGCCCTGCGCCATTTG CGGCGCCTGGACAGCACGTTGATCGACAGCGCCTTCAGCGTCGCCCCCGGTGGCTTGCGCATTCTGGCGTACAGCGACAGCGACGAGCCTCTTGAGCACA CCAGCGCGGCCGAGTTGTACATGTTGCTCAGCGCTTTGCGTCAGCACTTTCAGCACATCGTGGTGAACCTCACCGGCCAGCCCGACAGCGAAGCGCTGCG CACCTTTGTCAGCCATTGCGACAAATTGCTGTGGTACACCGACCAGAACGTCCTCGACTGCCGACGCAATCTGGCGATTCTCAACCTGTGGCGCGCCAAA GGCATGAACCTGGAACACGCGCGGATGCTGGTGGACCGTTACCTGCGCGGCGTGGCGCCCGACGCCGACGCACTGGCCAAGACCTTCGGCCTTGAAGTGC TGGCCACGCTACCACCTGCTGACGAACTGCGGATGAACGCCAAGAACCAGGCCACCACCCTCTTCGAACTCGGCCCGCGTGAGGCGCTGACCCAAGGCCT GAAAACCCTGGGCGAGCGCCTGGCCCAACGTTCTCAAGGGCTTGCCAGGCCCTCAGCCCACTGGCTGAGCCGCTTCTGGGGGGCTAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGTGAAAAACTGTTCGGTGCCGGCCTGCACGGGGCGCACGGGCATGCCGAGCACGACAGCCTGAAACGGGTGCTGCACCGCTACATCATCGAGGCCAT TGAAGAAACCGGCAAAAACCTGCTGGAAGACGCGCGCCCCGCGCTAGCTCATTTCGTCACTGACAAAGTGGCTGAATACGTGTCGCGCCTGCACCTGGCG ATTTCACGCTATGAAATGGAACGGCTGGCCGAGGAAATCGTTGACGAGCTCACCGGCTTTGGCCCGCTGGAAGTCCTGCTGCGCGATCCGGCGGTCACCG AAATTCTGGTCAATGGCCCGCACCGGGTGTTTATCGAGCGCGACGGCATCCTGCACCAGAGCGAACTGCGCTTTATCGACGACCACCACGTCGAGCGGGT CATGCAGCGCATTCTGGCGCCGTTGGGGCGACGGCTCGATGAGTCCTCGCCGATGGTCGACGCGCGCATGCCCGATGGCAGCCGGGTCAACGCGATCATC
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| Amino Acid Sequence |
>pilus assembly protein
MSQGLSQTFLALTRNNTDLEWLQGALAPIGQVVGASTGSLDELLALVDVTFAGLVFVGLDREKVVAQCALIEGALEAKPMLAIVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLSKRLPAVTPNAQLGGLTVMYSAQCNADGALLTSHLGLVVQKSDQQTLLLDLGLPRGDSLALLGLQSAFYFGDALRHL RRLDSTLIDSAFSVAPGGLRILAYSDSDEPLEHTSAAELYMLLSALRQHFQHIVVNLTGQPDSEALRTFVSHCDKLLWYTDQNVLDCRRNLAILNLWRAK GMNLEHARMLVDRYLRGVAPDADALAKTFGLEVLATLPPADELRMNAKNQATTLFELGPREALTQGLKTLGERLAQRSQGLARPSAHWLSRFWGAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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