Pseudomonas fluorescens AU11164, AA046_RS17610
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11164 Contig_15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGCGCGGCAGTCAGCTCGCCATTGGCTTGCAACGTGCTCAGCAATTGGCTCTGAGGGAATTGAAGCATTTTCAACGCGTACTCGATCACCACCCCGTTA CCGCCGATCACAGGCGCATCGGGTGTGCCGGTGATGGGCAGTACGTCAAGGTATAACCCTTCAGTGAGGCGCTTGTTCAGGCGCAGTTCTTCATTGCAAA AGTATTGGCGTTGATTGAGGTCGGTGAAGTCGAGAAAACCGAAGTTGACCGGTTTTTTCAGCTTGTAGGCATACTGGCCAGTGAGAATTACCCAGGAAAT GTGCGTTTCGATTACCTGAAACCCATCGACTTCATGCGGGTATAGGCTCGGGTTCTGTAGCGCGGCGATCAGGTTCTGGCTCACGGTTGGTCCTTCAAGA CGGGGAAAATTCAATGGGCCATTATGGCTCCTGATGGCGGTACTGCAAACCGCCGGGCTGCGCATGTTGAACATGAACAAAGTGCGTATAATCCGCCGCC
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| DNA Sequence for Gene |
>AA046_RS17610
ATGACTCGTACCCGATCCCCCCGTTCCCGTTCCAAACGTCCCTCCCGTGGCGGCCTGCGCCCATGGCTGGGCTGGGCGCTCAAGCTCAGTCTGGTCGGCC TGGTTGTACTGGCAGGTTTCGCCGTCTACCTCGATGCGATCGTTCAGGAGAAGTTCTCCGGCAAACGCTGGACCATCCCGGCAAAGGTTTACGCCAGGCC GCTGGAGCTGTTCGTCGGCCAAAAACTGGCCAAGAACGACTTCCTCACCGAACTTGATGCCTTGGGCTATCGCCGCGAGAGCGCGGTCAGTGGCCCGGGT GCCGCGTCGGTCAATGGCAATACGGTTGACCTCAACACCCGCGGCTTCCAGTTTTATGAAGGCGCTGAAAAGGCGCAGCCAGTGCGTGTGCGCTTCTCCG GTGATTACGTAGCCGAACTGTCGACCTCCAATGGTGCCAAGCTGCCCGTGGTGCGCCTTGAGCCGCTGCTGATTGGCGGCCTGTACCCGAAGAACCTCGA AGACCGCATTCTGATCAACATCGATCAGGTGCCTCCGTTTCTGCTGGAAACCCTGGTAACGGTTGAAGACCGCGATTTTTACCATCACTTGGGGGTGTCC CCGAAATCGATCGCCCGTGCTATCTGGGTCAACTCGTCTTCCGGGCAAATGCGCCAGGGTGGCAGTACGCTGACTCAGCAATTGGTGAAAAACTTCTACC TGACCAACGAGCGCAGTCTTAGCCGCAAGCTGACGGAAGCGATGATGGCGTTGCTGCTGGAGTTGCATTACGACAAGCGCGAAATCCTTGAGGCTTACCT CAACGAGGTCTTTGTCGGGCAGGACGGACAGCGAGCGGTGCATGGTTTTGGTCTGGCCAGCCAGTTCTTCTTCAGCCAGCCATTGTCTGAGCTCAAGTTG CATCAAGTGGCTTTACTGGTGGGGATGGTCAAAGGGCCGTCTGCCTATAACCCGCGTCGTTACCCGGAGCGTGCGCTTGAACGACGCAACCTGGTGCTCG ATTTGCTTGAGCAGCAAGGTGTCGCCACCGCAGAGCAAGTGGCGGCAGCCAAGAAGATGCCGCTGGGCGTGACCAAACGCGGAAGCCTCGCAGACAGTTC GTTCCCGGGTTTCCTGGATTTGGTCAAACGTCAGTTGCGTGAAGACTATCGCGACGAAGACTTGACTGAAGAAGGTCTGCGGATTTTCACCAGTTTTGAT CCGATCTTGCAGATGAAGTCCGAGGCCGCTGTCGGAGAAACCTTCAAACGGTTGGCTGGGCGCAAGGGTTCCGATGAGGTTGAGGCCGCGATGGTGGTGA CCAACCCCGAAACAGGTGAAGTGCAGGCGCTGATTGGCAGCCGCCTGCCGGGTTATGCCGGCTTTAACCGGGCACTGGATGCGGTGCGGCCGATTGGCTC GCTGATCAAACCAGCGGTTTATCTGACCGCACTTGAACGTCCGAGCCAGTACACATTGACCAGTTGGTTGTCGGACGAGCCGTTATCGATCAAAGGCGCC GATGGTCAGATCTGGAAGCCTCAGAACTATGACCGTCGTTCCCACGGTACGGTGTTCCTGTATCAGTCGATGATGAATTCCTACAACTTGGGCACTGTGC GACTGGGGCAGGAAGTGGGCGTTCCCAATGTGCTCAAGACCCTGGCGCGGCTTGGGGTGGAGCGTGAGTTCCCGGCGTTCCCTTCCATGTTGCTGGGCGC CGGTGCCTTGAGCCCGATGGAAGTGGCGACGATGTACCAAACCTTGGCCAACGGTGGTTTCAATACCCCGATGCGCGGGATTCGCAGTGTGCTGACGGCC GAAGGTGAGCCGCTCAAGCGCTACCCGTTCCAGATCCAGCAGCGCTTTGATCCGGGGTCCATCTACCTGATTCAAAACGCCATGCAGCACGTCATGCGTG AGGGGACAGGGCGTTCGGTTTACAACGTATTGCCCAAGAGTCTGGCGTTGGCCGGCAAGACCGGTACCAGTAACGATTCACGTGACAGCTGGTTTGCCGG GTTCAGCCAGGATCTGCTGGCTGTCGTTTGGCTGGGGCGTGATGACAACGGTAAAACACCGTTCACCGGTGCAACGGGCGCCTTGCAGGTATGGACCAGC TTTATGAACAAAGCCGACCCTCTGCCGCTGGATATGCCGGAACCGGATAATATCGTGCAAGCCTGGATTGACCCCCATACCGGCCAGGGTTCCGATGCGA ACTGCCCTGGGGCTGTGCAGATGCCGTATATTCGCGGCAGTGAGCCGCCCGCCGGAGCCAGTTGTGCAGCCGAAACGCCTGCAACCGGTGAAGCGGTGAT GGATTGGGTCAAGGGCTGGTTGAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAAGAGGAATTGACGTGAATAAGTGGTGGGTTCCGGCTGTTACAGCCCTGGCTTTGCTCAATGGTTGCGCCAGTGTTCAACAGGGTTCTATCCCTGTG GTCGATGCGGGCGTTCCTGTATCCAATAACGAGCGTGTTTCTGCTCAGCGTACGGCGAGTCATTATCCGCAGGCGACTGCACCGCGTGCCGCGCAGACTC AGGCGATCCCTCAGGATTCCGGCGTCGTGGTGATGATTCCCGGTGGTGCGTCGGCGGTGTCCACGCCGATCAGCACCGAGCCGTTTACGCCGGGGCCAAT CACACCGGGCCCGGCGGCGGCGCCTATCAGCACTGGCGACTACACACCTGGCGCTGCTTACCGTGCACCGACCCCGGTGACGCCAAGCGGCATTCCGTCC AGCAGTGGTGGACTGGCAGCTGATGAGCAATTGGATGGCCCGGTGCTGGCTTTGCTGACCACCGCTCAGCAACAGCAAGCAACCGGTGATTTGAATGGCG
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| Amino Acid Sequence |
>penicillin-binding protein
MTRTRSPRSRSKRPSRGGLRPWLGWALKLSLVGLVVLAGFAVYLDAIVQEKFSGKRWTIPAKVYARPLELFVGQKLAKNDFLTELDALGYRRESAVSGPG AASVNGNTVDLNTRGFQFYEGAEKAQPVRVRFSGDYVAELSTSNGAKLPVVRLEPLLIGGLYPKNLEDRILINIDQVPPFLLETLVTVEDRDFYHHLGVS PKSIARAIWVNSSSGQMRQGGSTLTQQLVKNFYLTNERSLSRKLTEAMMALLLELHYDKREILEAYLNEVFVGQDGQRAVHGFGLASQFFFSQPLSELKL HQVALLVGMVKGPSAYNPRRYPERALERRNLVLDLLEQQGVATAEQVAAAKKMPLGVTKRGSLADSSFPGFLDLVKRQLREDYRDEDLTEEGLRIFTSFD PILQMKSEAAVGETFKRLAGRKGSDEVEAAMVVTNPETGEVQALIGSRLPGYAGFNRALDAVRPIGSLIKPAVYLTALERPSQYTLTSWLSDEPLSIKGA DGQIWKPQNYDRRSHGTVFLYQSMMNSYNLGTVRLGQEVGVPNVLKTLARLGVEREFPAFPSMLLGAGALSPMEVATMYQTLANGGFNTPMRGIRSVLTA EGEPLKRYPFQIQQRFDPGSIYLIQNAMQHVMREGTGRSVYNVLPKSLALAGKTGTSNDSRDSWFAGFSQDLLAVVWLGRDDNGKTPFTGATGALQVWTS FMNKADPLPLDMPEPDNIVQAWIDPHTGQGSDANCPGAVQMPYIRGSEPPAGASCAAETPATGEAVMDWVKGWLN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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