Pseudomonas fluorescens AU11235, AA056_RS05450
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11235 Contig_55, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCATCATCGACCAGGGCGGTGCCGAGCAACTGCTGGGGCACGGTGACATGCTCTACATGCCGCCTGGCACTAGCTTGCCGATTCGCGTGCATGGCGCG TTTGTGTCCGACGAAGAAGTGCACCGTGTGGTTGAAGCCTGGAAGCTGCGCGGCAGCCCGGATTACAACGACGACATCCTCAGCGGGGTGGAAGAAGCAG GCAGCGGCTTTGAGGGCGGTGGTAGCGAAGGCGGTGATGATGCAGAAACCGACGCCTTGTATGACGAAGCTGTCCAGTTTGTACTGGAAAGCCGTCGCGC CTCTATTTCAGCCGTTCAGCGAAAATTGAAAATCGGCTACAACCGCGCGGCCCGCATGATTGAATCCATGGAAATGGCCGGGGTTGTAACCTCCATGAAC ACCAATGGCTCGCGTGAAGTTCTGGCGCCGGCCCCACTACGCGACTGATCGGCCCGCGGCGCACTCGCGGGCTGGGTTTAACTAATCAAAGAGGGTTTTC
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| DNA Sequence for Gene |
>AA056_RS05450
ATGCGTTTTTTCAGCATGCTGTTGCTACCGGTTCTGGCTATGTCTTCTCTTGCGGCTCATGCCGGCGAACAGGACGTAAAACGGTTAGGCCAACTGTTGG GACAGTCCAATACCATCTCGGCCCGTTTCAGTCAGTTGACGCTGGATGGCAGCGGCACTCAATTGCAGGAAACGGCCGGTGTCATGTCGGTCAAGCGCCC GGGGCTGTTCTACTGGCACACCGATGCGCCTCAAGAACAGACCATGATCTCGGATGGCAATAAAGTCACTCTTTGGGACCCGGACCTGGAGCAGGTGACC ATCAAGAAGCTGGATGAGCGTTTGAACCAGACCCCTGCTTTGCTGTTGTCGGGAGACGTCTCAAAAATTGATCAGAGTTTTGACGTCACCTCCAAGCCGT CGGGAGAGGTGTTGGAGTTCATGTTGAAACCCAAAACCAAAGACACCCTGTTCGACTCGCTCAGGTTGTCTTTCCGCAACGGCAAGATCAACGATATGCA ATTGATCGACAGTGTCGGTCAGCGCACCAATATCCTGTTCAGCGGGGTGAAGGTGAATGAAGACATTCCTGCCAGCACATTCAAGTTTGTCGTGCCCAAA GGTGCTGATGTCATCCAGGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCACTGTGCCGATCGGGCGGTGACGCGCGGCTAGTATTTTTCTGGCCGTGCCAGAGCGGTTTTTTCGCGCAGTCAGCGCCCCCGTGGCAGGGCGTGAGC ATCGCCATGGCATTGGCCCGCAGCACACACGTGAGGTTGTTTAAACAGTGATGGACCTGTTTCGAAGTGCACCAATCGCTCAGCCTCTGGCAGCCCGTTT GCGCGCCGCCAATCTGGATGAGTACGTGGGCCAGCAACATCTGTTGGCCCGCGGCAAGCCCCTGCGTGAAGCGCTGGAACAGGGCGCGTTGCACTCGATG ATCTTCTGGGGCCCGCCGGGCGTGGGCAAAACCACGTTGGCGCGGTTGCTGGCGCAAGTGTCTGACGCGCACTTTGAAACCGTGTCAGCGGTGCTGGCGG GGGTTAAAGAGATTCGCCAGGCCGTGGAAGTGGCCAAGCAACAGGCCGGTCAATATGGCCGTCGCACCATCCTGTTCGTCGATGAAGTCCACCGTTTCAA
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| Amino Acid Sequence |
>membrane protein
MRFFSMLLLPVLAMSSLAAHAGEQDVKRLGQLLGQSNTISARFSQLTLDGSGTQLQETAGVMSVKRPGLFYWHTDAPQEQTMISDGNKVTLWDPDLEQVT IKKLDERLNQTPALLLSGDVSKIDQSFDVTSKPSGEVLEFMLKPKTKDTLFDSLRLSFRNGKINDMQLIDSVGQRTNILFSGVKVNEDIPASTFKFVVPK GADVIQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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