Strain | Pseudomonas fluorescens strain AU11235 Contig_42, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GACGCCATGCTGGCGTGCCGCGAACGCAGCACGTTCATTCCGATTCTGGCCAACAGCTTCGCGCGGCACACCACTGAAGTGCTGGTCGAACATGCCGAGC GCGAGCACGGCGATTCCAAGTACAGCCCGATGCGCCTGATCAACCTGATGTTCGATCTGGTCACCTGCATGACCACCACGCCGTTGCGCCTGCTGAGCAT CATCGGCTTCAGCATGGCTTTGTTGGGCGGGCTGTTCGCCATCCTGTTGATCGTGTTGCGCCTGATCTTTGGGGCGACCTGGGCCGGTGACGGCACGTTC GTCCTGTTTGCGGTGCTGTTTGTGTTCACCGGCGGACAGTTCATTGGCATGGGCCTGCTGGGTGAATACCTGGGCCGCATGTACAGCGATGTGCGGGCCC GGCCACGCTTCTTTATCGAAAAAATCGTGCGCGCCGAGCCGGCCAAGGCTGACGTTTCGACGACCCCTTCTTCTATTTCCACCTCGACACAGGTCCAATC
|
|
DNA Sequence for Gene |
>AA056_RS06780
ATGAGTTTGAAAGCCGTAGTTTTCGCCTATCACGATATTGGCTGCACCGGCATCGATGCTTTGCTCAACGCCGGGTATGAAATCGCAGCGGTGTTCACCC ATGCTGACGACCCGAAGGAAAACAACTTTTACGGTTCGGTTGCGCAGCTGTGCGCGCGCAAAGGCATCCCGGTGCATGCCCCGGAAGACGCCAACCACCC GTTGTGGGTCGAGCGCATTCGCAAACTGAACGCCGATTACCTCTTCTCGTTCTACTACCGCCATTTGCTGGGCGAAGAACTGCTCGCCAGCGTCAGCCAG GGCGCCTTCAACCTGCATGGCTCGTTGCTGCCGCGCTACCGTGGCCGCGCCCCGGCCAACTGGGTGCTGGTCAACGGTGAAACCGAGACCGGCGTCACCC TGCACCGCATGGTCAAACGCGCGGATGCCGGTGCCATTCTGGCCCAGCAGCGGGTCAGCATCGAACGCAGCGACACCGCGCTGAGCCTGCACGCCAAGCT GCGCGAAAGCGCGGCAGCCTTGTTGGCCGAAACTTTGCCCCTGCTGCCGGAAGGCAAGCTGACCGAAACCCCGCAAGACGAATCCAAAGCCACGTACTTC GGGCGTCGCACCGCCGCTGATGGCCTGCTGCAATGGGCGCGTCCGGCTGAAGAATTGTTCAATCTGGTGCGGGCGGTGACTCAACCGTATCCGGGCGCGT TCTGCGCCGTGGGCGAGCACAAACTGATTGTCTGGGCCGCCGAGGTGATGCCGGGCAATGCAGGGCTGGCGCCGGGCCACGTCATCAGCTGTGAGCCCCT GCGCATTGCCTGCGGCAAAGACTCGCTTGTCATCACCGCCGGTCAACGCAACGCCGACGGCCTGTACCTGAGCGGCCCGCAACTGGCCCGCGAACTGGGT CTGGTGGACGGCTCGCGCCTGCGCGGCAGTGAATCCGGGCGCCCTGCCCGCCGCACCCGCGTGCTGATCCTCGGGGTCAACGGGTTTATCGGTAACCACC TGTCCGAGCGCCTGCTGCAAGACGACCGCTACGAAGTGTATGGCCTGGACATCGGCTCCGACGCCATTGACCGCCTGCGCAGCCACCCGAACTTCCACTT TGTGGAAGGCGACATCAGCATCCACACCGAGTGGATCGAGTACCACATCAAAAAATGCGACGTGGTCTTGCCGCTGGTGGCCATCGCCACGCCGATCGAG TACACCCGTAACCCGCTGCGGGTGTTCGAGCTCGACTTCGAGGAAAACCTCAAGCTCGTGCGCTACTGCGTCAAATACAACAAGCGGGTGATTTTCCCGT CGACGTCCGAAGTGTATGGCATGTGCCAGGACAAGAATTTCGACGAAGACACCTCCAACCTGATCGTCGGCCCGATCAACAAGCAGCGCTGGATCTACTC GGTGTCCAAGCAGTTGCTCGACCGAGTGATTTGGGCTTACGGCCAGAAAGGCCTGAAATTCACCCTGTTCCGTCCGTTCAACTGGATGGGCCCGCGTCTG GACCGTCTGGATTCGGCACGGGTGGGCAGCTCGCGCGCCATTACCCAACTGATTCTGCATCTGGTGGAAGGCACGCCGATCCGTCTGGTGGATGGCGGTG AGCAAAAGCGTTGCTTCACCGACGTGGCCGACGGCATCGAAGCACTGGCGCGCATCATCGAGAACCGCGACGGCAAGTGCGACGGCCAGATCATCAACAT CGGCAACCCGGAAAACGAAGCCAGCATCCGTCAACTGGGCGAAGAGTTACTGCGTCAGTTCGAAGCCCACCCGCTGCGCGACAACTTCCCCCCGTTCGCC GGTTTCCGCGACGTTGAGAGCCAGTCGTTCTACGGCACCGGTTATCAGGACGTCAGTCACCGCAAACCGAGCGTTGAAAACGCCCGTCGCCTGATCGACT GGACACCGACCACCGAACTGAGCGAAACCATTGGCAAGACTCTGGACTTCTTCCTGCGTGAAGCCATGGTAGAAATCGCGGAAAAACGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
TGCAAGCAGGCCTGCGTATCGACGTCGACACGTACCGCGGAACCCGAGAAGGGGTTCCGCAACTGCTCGAATTGCTGGATGAAGCTCAGATCAAAGCCAC GTTTTTCTTCAGCGTGGGGCCGGACAACATGGGACGCCATCTGTGGCGGCTGATCAAGCCCCAGTTCTTCTGGAAAATGCTGCGTTCCAAAGCCGCCAGC CTGTATGGCTGGGACATTTTGCTGGCGGGCACCGCCTGGCCGGGCAAACCGATTGGCCAGGAGCTGGGGCACCTGATGCGCCAGACCCTGGCCGCGGGCC ATGAAGTGGGCTTGCACGCGTGGGATCACCACGGCTGGCAAGCCAACGCCGGGCGTTGGTCGCAGGCGCAATTGATCGAGCAGATCCGCCGGGGTGTCGA CACCCTGAGTGACATCACCGGCCAGGCGGTCGAGTGTTCGGCCGCCGCGGGCTGGCGCGCCGATGAACGCGTGGTTGAGGCCAAGCAGGCCTTTGGCTTT
|
|
Amino Acid Sequence |
>UDP-4-amino-4-deoxy-L-arabinose formyltransferase
MSLKAVVFAYHDIGCTGIDALLNAGYEIAAVFTHADDPKENNFYGSVAQLCARKGIPVHAPEDANHPLWVERIRKLNADYLFSFYYRHLLGEELLASVSQ GAFNLHGSLLPRYRGRAPANWVLVNGETETGVTLHRMVKRADAGAILAQQRVSIERSDTALSLHAKLRESAAALLAETLPLLPEGKLTETPQDESKATYF GRRTAADGLLQWARPAEELFNLVRAVTQPYPGAFCAVGEHKLIVWAAEVMPGNAGLAPGHVISCEPLRIACGKDSLVITAGQRNADGLYLSGPQLARELG LVDGSRLRGSESGRPARRTRVLILGVNGFIGNHLSERLLQDDRYEVYGLDIGSDAIDRLRSHPNFHFVEGDISIHTEWIEYHIKKCDVVLPLVAIATPIE YTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDKNFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGQKGLKFTLFRPFNWMGPRL DRLDSARVGSSRAITQLILHLVEGTPIRLVDGGEQKRCFTDVADGIEALARIIENRDGKCDGQIINIGNPENEASIRQLGEELLRQFEAHPLRDNFPPFA GFRDVESQSFYGTGYQDVSHRKPSVENARRLIDWTPTTELSETIGKTLDFFLREAMVEIAEKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|