Pseudomonas fluorescens AU11235, AA056_RS19225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11235 Contig_40, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGGCAGGGCGGGCCGCTGATGCACGTGATTGCGGCCAAGGCCGTGTGCTTCAAGGAAGCCTTGGAGCCTGCGTTCACCACCTATCAACAGCACGTGATC GACAACGCTCAGGCGATGGCCGAGGTGTTTATCAAACGCGGCTATGACGTCGTGTCCGGTGGTACGGACAACCATTTGTTTCTGGTCAGCCTGATCCGTC AGGGCTTGACCGGCAAAGACGCCGATGCCGCGCTGGGCCGCGCCCACATCACCGTCAACAAGAACGCAGTGCCCAATGACCCGCAGTCGCCGTTCGTGAC CTCGGGGTTGCGCATCGGCACCCCGGCGGTCACCACCCGCGGTTTCAAAGTGGCGCAATGCACCGAGCTGGCTGGCTGGATCTGCGACATCCTCGATCAC CTCGGCGATGCCGACATTGAGGCGGACGTGGCGCGGCAAGTGACGGCGCTGTGCAAAGACTTCCCGGTTTATCGCTGAGCGCGGTTTTGGAGTAGATCCT
|
|
| DNA Sequence for Gene |
>AA056_RS19225
ATGCAACGGTATTCAGGCTTCGGCCTCTTCAAGCACTCCCTCAGCCACCACGAAAACTGGCAGAAGATGTGGCGCACACCGACGCCGAAAAAGGTCTACG ACGTGGTCATCGTCGGGGGCGGCGGGCACGGGTTGGCCACTGCGTATTACTTGGCCAAGGCACACGGCATCACCAATGTGGCCGTGGTCGAGAAAGGCTG GCTGGGGGGCGGCAATACAGCGCGTAACACCACCATCGTGCGTTCCAACTATTTGTGGGACGAGTCGGCGCACTTGTATGAACACGCGATGAAACTCTGG GAAGGCCTGTCCCAGGACCTCAACTACAACGTCATGTTCTCCCAGCGCGGCGTCTACAACCTGTGCCATACCCTGCAAGACATGCGCGACTCGGAACGCC GGGTCAGCGCCAACCGCCTCAATGGCGTGGACGGCGAACTGCTCAACACGCAGCAGGTGGCCGATGAAATCCCGTACCTGGATTGCTCAAAAAACACCCG CTACCCGATCCTGGGCGCCACCGTGCAACGTCGCGGCGGCGTGGCGCGTCACGACGCCGTGGCCTGGGGCTTTGCCCGGGCAGCCGATGCGTTGGGCGTG GACTTGATTCAACAAACCGAAGTGCTGGGCTTTCGCAAGGAAAACGGCGTGTGCATCGGCGTCGAAACCAGCAAAGGCTTTATCGGCGCCAAGCGCGTGG GCGTGGTCACGGCGGGCAATTCGGGGCACATGGCGCGTCAGGCCGGGTTCCGCCTGCCCATCGAGTCGCACCCGCTGCAAGCGCTGGTGTCCGAGCCGAT CAAGCCGATTATCGACAGCGTCATCATGTCCAACGCTGTCCACGGCTACATCAGCCAGTCCGACAAAGGCGACCTGGTGATCGGCGCGGGGATTGACGGC TGGGTCGGCTACGGCCAGCGCGGCTCCTACCCGGTGATCGAGCACACGATCCAGGCGATTGTGGAAATGTTCCCGGTGTTGTCCCGCGTGCGCATGAACC GCCAGTGGGGCGGCATCGTCGACACCACGCCCGACGCGTGCCCGATCATCTCCAAAACCCCGGTGCCCAACCTGTTTTTCAACTGCGGCTGGGGCACGGG CGGCTTCAAGGCTACCCCAGGCTCGGGCAACGTGTTTGCCGCCAGTCTGGCCAAGGGCGAGATGCACCCGCTGGCCGCCCCGTTTTCCCTTGAGCGCTTC CACAACGGCGCGCTGATCGACGAACACGGCGCTGCTGCCGTCGCTCACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAGGAGAAAGACCTATGTTGCATATCTTCTGTCCCCACTGCGGCGAGTTGCGCTCTGAAGAAGAGTTCCACGCCTCAGGGCAAGCACACATCCCGCGCCC GCTGGACCCCAATAGCTGCACCGATGCCGAGTGGGGCGATTACCTGTTCTTTCGCGACAACCCGCGCGGCCTGCACCACGAGTTGTGGAACCACGTGGCC GGGTGCCGTCAGTTTTTCAACGCGACCCGCAACACCGTGACGTACGAAATTCTTGAGACCTACCGCATCGGCAGCCAGCCGCAGTTCACTGAACAGTCGC CTGCGCCAGCCCCGACAACGGCCCCCCGCGAGCTGGGAGAAAAGGTATGAGCCAGACCCATCGCTTGGCCCATGGCGGCCGTGTTGATCGCACGCGCGTG CTGACCTTCACCTTTAACGGGCACACCTACACCGGTTACGAAGGCGACAGCCTGGCGGCCGCGTTGTTGGCCAATGGCGTACACATCATCGGCCGCAGTT
|
|
| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQRYSGFGLFKHSLSHHENWQKMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKAHGITNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLW EGLSQDLNYNVMFSQRGVYNLCHTLQDMRDSERRVSANRLNGVDGELLNTQQVADEIPYLDCSKNTRYPILGATVQRRGGVARHDAVAWGFARAADALGV DLIQQTEVLGFRKENGVCIGVETSKGFIGAKRVGVVTAGNSGHMARQAGFRLPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG WVGYGQRGSYPVIEHTIQAIVEMFPVLSRVRMNRQWGGIVDTTPDACPIISKTPVPNLFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAAPFSLERF HNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|