Pseudomonas fluorescens AU11235, AA056_RS09895
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11235 Contig_37, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGCACCGTCGAACGACAAGCGCCGCCATTTATCCCTTTTACAAAAGCCGTCGAGCAGCAACCTCTGTTCGACTTTGCACATGCTGCGGGCACGCTGGT CGGATTCCGCTCACCCGATTTCATTCAGGGCATCGGCGTGGCCGGTTACCACGAACACTTCATCACCGAGCAGCGCCACGGCGGCGGGCATGTCATTGAC TTCCATTTGCAGCACGGTTCAGTGCAGTTCGGCATCATCAGTCGGTTGGTGGTGCACTTCCCCACCGGCGAGGACTTCAAGCACGCCAATCTGACCCCGG CCTTTCTGGACCGGGATATCCGCCGGGTTGAGCAGTCATCGTGAGGCCGCCTGTGACCTTGAGGCTCGGGCTTTGAGGTCACTTCGAACGCGAATACATA TTCTTAAATAGAATATCTAAATCGTTTTATATTCTTTTTTAAAAGCTAAATTTCCTGCAAGACTCTCGTCATAACGATTCCAACTCATGATGAGAACGAA
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| DNA Sequence for Gene |
>AA056_RS09895
ATGAAGAAAATCACTGCCCTCACCGCATTGACCCTGGCTGTTTTGTCAGGCTTGGCTCACGCCGATCGTCTGGACGACATCAAAAAATCCGGCGTGCTGC GCGTGGCGTCGTTCGACAGCAATCCGCCGTTCGGATTTGTGGATGCCAAGAGCAAGCAGATTGAAGGCCTGGACGTGGATTACGCCAAGGCCATCGCTGA CAAATTGGGCGTGAAATTGCAGCTTCAGCCAACCAACCCGGCCAACCGCGTACCGCTGCTGGTGGCCAACAAGGTGGATCTGGTGCTGGCCAACTTCACC ATCACCCCGGAGCGGGCCGAGCAGGTGAATTTCAGCATTCCGTATTTCTCGTCCGGTCAGCAATTCATCGTCAAAAAAGGCACCCTCACCTCCCCTGAAG AGTTGAACAAATGGCGCGTGGGGGTGGACAAGGGCACGGTCAATGAAGGCGTGCTGCGCAAGAAATTCCCGGGTGCCAAGGTTGTTGCCTATGACGACAC CCCCTTCGCATTCACCGCCCTGCGCAACGGCAACGTACAAGCCATCACTCAGGATGGGCCGAAACTGATCGGCTTGCTGGCTAATGTGCCGGACAAGGAC AAGTACGAAGTGCCGCCGTTCACCATTTCCAACGACTTGATCGGGGTGGGCATTCCCAAAGGTGAAACAGCGCTGACCGAAGTGGTCAACCAAACGCTGG TCGAGCTGGAAAGCAAAGGTCAGGCGCAAACCATCTACGACGCCTGGTTCGGCCCGAACACGAAAACCCCACTGACCCGTCTCTACAAGATCGGTGACAA GAGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCTCACTGCTGCATCATCGTTCAACCCGTCACGGTCAACCGGACGGGTTTGTTTGTTTCTGGATGGACGCTGTTTATGTTCGGTGAACTGCTTGCCCC GCACTACTTGCACTGGCTGCTGGATGGCTTTGTGCTCACGCTGATCCTGTCACTGCTCACTTGTGTCTTCGCCACTGGCCTCGGCTTTTTGCTGTGCCTG GCACGCTTGTCCTCTGCGCGTCTGTGGTCGTGGCCCGCCCGCGCCTATCTTTCACTGTTTCGCAACACGCCACTGCTGGTGCAATTGTTTTTCTGGTACT TCGGCGTCACCGCGATGCTGCCTGAAGGGTGGGTGATGTGGCTTAACCAGCCACGCAGCCTGTCGTTAGGCTTCTTTGAGCTGCAATGGCCATCCTTTGA ATTCATCGCCGGGTTCTGGGGATTGATGCTCTACACCGCGGCCTTTATTTGTGAAGAGTTTCGCGCCGGGGTCAGCTCGGTGCGCATTGAGCAACGAGCC
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| Amino Acid Sequence |
>amino acid ABC transporter substrate-binding protein
MKKITALTALTLAVLSGLAHADRLDDIKKSGVLRVASFDSNPPFGFVDAKSKQIEGLDVDYAKAIADKLGVKLQLQPTNPANRVPLLVANKVDLVLANFT ITPERAEQVNFSIPYFSSGQQFIVKKGTLTSPEELNKWRVGVDKGTVNEGVLRKKFPGAKVVAYDDTPFAFTALRNGNVQAITQDGPKLIGLLANVPDKD KYEVPPFTISNDLIGVGIPKGETALTEVVNQTLVELESKGQAQTIYDAWFGPNTKTPLTRLYKIGDKS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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