Pseudomonas fluorescens AU11235, AA056_RS18085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11235 Contig_36, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGCTGCTCGTGGTCAAGTTCGGCTCTTGCTACGAGAGGGGAGTTTTGGGCGTCACAAGCGAGTAGTACAGTGTCTTTGATTCCGTTGTGCGCACGGTGC TGTGCTATCACTCTGTTTTCGCCCATTACTCTCATTAGCGTAGAACTTGTAGAGCCTTGAACTTCCGTCGCAAGCCTATTATCGGCATACAGGTATGTCG TAGTGCTGGGTTCGGATGGAAACGATTGGGTGAGTAATCGATTCAATGGGTCATAGCGATACTGACACACAACAGCTTTATGTGAATTCTTCATGCGGCC CACCTCCTTGTTTTTCCCTTCTGATTGTCCAAGGTTGACTAGGTTAACGGTACTAGCAGAAGTGATAGGTCTATCACGCCGAGAGGGGGCGGAGGGATTG AAAAACTGTCGAAGCGCTTTTTCTGCAGGGCCCGTTCAGCTAGTGAGTGCGAAAAACAGTGCTCTACGCTACCCTTCGCCGATGATTTTCGAGGTCGACT
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| DNA Sequence for Gene |
>AA056_RS18085
ATGCACATTCATATTCTTGGTATTTGCGGCACATTCATGGGTTCGCTGGCGGTTTTGGCCAAAGAACTGGGCCATCACGTGACAGGCTCCGACGCGAACG TCTATCCGCCGATGAGCACCCAGCTGCAAGCTCAAGGCATTGAGTTGACCCAAGGCTACGACCCCGCCCAGCTGGACCCCGCGCCTGATGTGGTGGTGAT CGGCAATGCGCTGTCGCGTGGCAATCCGGCGGTCGAATACGTGCTCAACAAAGGCCTGCCGTATGTGTCCGGGCCGCAATGGCTGGCTGATCACGTGCTG CAAGGCCGCTGGGTGCTGGCGGTGGCCGGGACTCACGGCAAAACCACGACCAGCAGCATGCTGGCCTGGGTACTGGAACATGCCGGCATGGCGCCGGGCT TCCTGATCGGCGGCGTGCCGCAAAACTTTGCCGTGTCGGCGCGGTTGGGCGACACGCCGTTTTTCGTGGTCGAGGCCGATGAGTACGACAGCGCCTTCTT CGACAAACGCTCCAAGTTTGTGCATTACCGTCCGCGCACCGCGATCCTCAACAATCTTGAGTTCGATCACGCGGACATCTTCCCCGACCTGCCTGCGATC GAGCGGCAATTTCACCATTTAGTGCGCACGATCCCCAGCGAAGGCCTGGTGATTCACCCAACCACTGAACCTGCCTTGCAGCGGGTGATTGACATGGGCT GCTGGACCCCGGTGCAAACCACGGGCGAAGGGGGTCAATGGCAAGCCCGCCTGTTGAGCGACGACGGTTCGCGCTTTGACGTGCTGTTCGAGGGCGTGGT TCAGGGCACTGTCGAGTGGGACATGACCGGCCAGCATAACGTCGCCAATGCCTTGGCCACGCTGGCGGCTGCCCGCCATGTTGGGGTGGTGCCGAGCATG GCGATTGATGGCCTGAGCGCCTTCAAAAGCGTGAAGCGCCGAATGGAAAAAGTGGCCGAGGTGAAGGGCGTCACGATTTATGACGACTTCGCTCACCACC CGACCGCCATTGCCACCACGCTGGACGGGTTGCGCAAGCGTATCGGCGATGCCCCGTTGGTGGCGATCATTGAACCGCGTTCCAACTCCATGAAACTGGG TGCCCACCGGGATGGCCTGCCGCAGAGCGTGGCCCAGGCCGATCACGTGGTCTGGTATGCACCGGCCAATCTGGGCTGGGACCTGGCGGCAACGGTTGCA TCGAGCCCTGTGTCGACCCGGGTCTGCGACTCGCTGGACGCTATCATCGCCGACGTCAAAACCCGCGTTAAGCCTGGCACCCACGTGGTGATCATGAGTA ACGGCGGCTTTGGCGGGCTACACGGCAAGCTGGCGGACGCGCTGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGGCCCGGAACGCATCACCCTGGCCGTAACCGGTGCATCGGGCATGCCTTACGCATTGCGTTTGCTTGATTGCTTGGTGCGCGAAGACCGCGAGGTTCA CTTCCTGATTTCCAAGGCCGCACAGTTGGTCATGGCGACTGAGACCGACGTTAACCTGCCGCCCAAGCCGCAGGCCATGCAGACGTTTCTGACCGAATAC ACCGGGGCGGCTGCCGGGCAGATCCGTGTGTACGGCAAGGAAGACTGGATGTCGCCGGTGGCCTCGGGTTCCGGCGCGCCGGCCGCGATGGTGGTGGTGC CGTGTTCCACGGGCACGCTGTCGGCCATTGCCACGGGCGCGTGCAACAACCTGGTCGAGCGGGCGGCGGACGTGACGCTCAAAGAGCGTCGCCAGTTGAT TCTGGTGCCGCGCGAAGCGCCGTACTCCAGTATTCATCTGGAAAACATGCTCAAGCTGTCGAACATGGGCGCCATCATCTTGCCCGCGTCGCCGGGTTTC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHHVTGSDANVYPPMSTQLQAQGIELTQGYDPAQLDPAPDVVVIGNALSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMAPGFLIGGVPQNFAVSARLGDTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLPAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIDMGCWTPVQTTGEGGQWQARLLSDDGSRFDVLFEGVVQGTVEWDMTGQHNVANALATLAAARHVGVVPSM AIDGLSAFKSVKRRMEKVAEVKGVTIYDDFAHHPTAIATTLDGLRKRIGDAPLVAIIEPRSNSMKLGAHRDGLPQSVAQADHVVWYAPANLGWDLAATVA SSPVSTRVCDSLDAIIADVKTRVKPGTHVVIMSNGGFGGLHGKLADALQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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