Pseudomonas fluorescens AU11235, AA056_RS16885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11235 Contig_36, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCCAGAGCAGGGCTTTTTCGGGGTGGGGGTTGCCTATATTTTGATCGCACCACACAGAACTTGCTCAGCAAGAAGGTCTTTGAAATGTCCAGCAGTATG GGTATGGCCAGCGTTTTCGCTTTGTCGTCTTTGTTGTTGTCGCCTTTGGCCATGGCGGAAGAATCGCCAGCGTTCGTTGCACAAAATGCAGCCCGCGCAG CCGCCTTTGAACAGCACCAAAAAGAACTCGCCGCCAGCCACCAACACGAGGCACAGCCTCAGCACACGCAGATTAAAGCCAGCACCAGCGATGACAGCAA GGACAGCTGATTCCCTCCATAAAGTCTTCCCGACCCAGTCAGTCACGGCCTTTATATGTGACTGATTGTTTCAAAAGCCGCTACTATAGCGGCTTTTTTT TGTTCTCAAAAAGCCGTCACGGCGTTTGGCGTCTTTCAAAAAGAGCCCGAATTTCTAACGAAAATAAAAACTGCCATCACCCAAAAGGAGCTACTGACCG
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| DNA Sequence for Gene |
>AA056_RS16885
GTGAAGAACGCACTCAAATTCAGCCCGCTATTCCTAGCGCTGGCTGCAACGATCCCGACCCTTGCTTACGCCGATGATGAAACGGCAAAAGACGGCTTTT TTGAAGGTTCGAGCCTCAAGCTGCATTTTCGCAATTACTACATGAACCACGATATTCGCAGCCCCAAAGCGGATGACAGTAAAGAGTGGGGCCAAGGGGT CATTGGGCGGTTCGAGTCGGGCTTTACCCAAGGTGTGGTGGGCTTCGGGCTAGACGCTTACGGCATGCTCGGCCTGAAACTCGACGGCGGTGGCGGTACG GACGGCAGCAGCATCCTGCCGGTCAGCGACGGTAGTGGCAAAGCGCCTACCGCGTTTTCGTCCGCTGGCGCAGCGCTAAAAATGCGCGCCTTTGACACTG AGTTGAAAGCGGGCGACATGTTCCTCACCAACCCGGTGATCGCCGGTGGCGAGACGCGCATGCTGCCGCAGACCTTCCGCGGTGTGACACTTACTAATCA CAGCCTGGATGGCTGGATGTTCGAAGGCGGCCAGGTCAGCTTCGAAAAACCTTACAACCAGAGCGGCATGCGCCGCCTGACGACCATGTATGGCAACCTC GATGGCCAGAACAGCAAGCACATGAACTGGGCTGGCGCCTCGTGGAGCGGCGTGCCTGAGCTCACCAGCAACCTGTATGCGGCCGAGTTGCAGGACATCT GGAACCAGTACTACTACGATCTGGATTACACCTACGCCCTGACCGATAGCGTCAGCCTGAACCCGGGGCTGCACTTCTATCACACTCAGGACACAGGCAA GGCCCTGCTGGGTGACATCGACAACAACACCTTCAGCCTGCATTTTGCCGTGGCTGTCGCGGGGCATACGGTGACCGCGGTGTACCAGCGGGTCAATGGC AACACGCCGTTTGACTACATCTATCAGGGCGACAGCGTTTATCTGGATAACTCGCAGCAGTATTCGGACTTCAACGGGCCGAACGAACGCTCGTGGAAGC TTCAATACGAATATGACTTTGCCGGCGTGGGCCTGGCCGGGCTGACGTCCATGATTTCGTACTCGCGCGGCGAACTTGACCTGACCAAGGTTGACCCCAA CAGCGTGGGTTACGGCAATTGGTACAACGCTGACGGCAAGCACGCCAAACACTGGGAACGCGACCTAACCGTCAAATATGTGCTGCAGGAAGGCCCGGCG AAAGACCTGGGCGTCGCGTTGCGCTGGTCGGCCAACCGGGGCAATGAGGCGTATCAGGCGGTCGACAGCAATGTCGATGAATACCGCGTCATCATCGACT ATCCTCTTGATGTGTTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCCTGATACAAAGCCAGCGTTTACGCTGGCTTTTTTGTGGGGGGGTGCTCATTTAGGGGCTGTCTAGAGGCCGACCGCAGCATGGCAATAACCCACCAC TCATCTAAACCACCGATCACGCAGGGCTGGTTGTTGATCGCCATGACGGCGTGCGTCATAGCCATTCTCAGCATCAATGCGTTTTTGCTGATGCGCGAGC ATCGCAGCGTTGAACTGGCGGCCATCCGTACCTCGCTCAACATTGTTCGCCTGATCGACCGCGACGTCCAAAACACCGTTGAGCAATACGACTCCGCACT CAGCGCGCTGATCCGTGTGTCGAAGCGTGGCGACCTTGGCAACCTTTCCCAGCCGCTGAAGCAAATGTTGATGTTCGATAAAGCTGAAGAAACACCCGAC AACGGTGGCTTTTTCATGCTCAACGCCCAAGGCGATCTGGTGGTCAGCTCCCTTGCCGATTACACGCCCGGTAAAAACTACAGTCATTGGCAAAGCTTTA
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| Amino Acid Sequence |
>porin
MKNALKFSPLFLALAATIPTLAYADDETAKDGFFEGSSLKLHFRNYYMNHDIRSPKADDSKEWGQGVIGRFESGFTQGVVGFGLDAYGMLGLKLDGGGGT DGSSILPVSDGSGKAPTAFSSAGAALKMRAFDTELKAGDMFLTNPVIAGGETRMLPQTFRGVTLTNHSLDGWMFEGGQVSFEKPYNQSGMRRLTTMYGNL DGQNSKHMNWAGASWSGVPELTSNLYAAELQDIWNQYYYDLDYTYALTDSVSLNPGLHFYHTQDTGKALLGDIDNNTFSLHFAVAVAGHTVTAVYQRVNG NTPFDYIYQGDSVYLDNSQQYSDFNGPNERSWKLQYEYDFAGVGLAGLTSMISYSRGELDLTKVDPNSVGYGNWYNADGKHAKHWERDLTVKYVLQEGPA KDLGVALRWSANRGNEAYQAVDSNVDEYRVIIDYPLDVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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