Pseudomonas fluorescens AU11235, AA056_RS14010
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11235 Contig_22, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACTCCGACTGGCTGCCTCCGGGCTTTGAATTGGTCAACAGCACCGTTCACCGTGATCCGAAGAGCAAATCCGAAGTCACCAGTCTCTTGTACGACGAC GGTTTGACACGATTTTCTGTCTTTCTTGAGCCTCTCAATGGCGCTTCAGCCCCTGATACACGGGTCCAGCTAGGGCCTACTGCGGCGGTTTCAAGGCATC TCACCACCAATAATGGCGATATGCTCGCCACGGTGGTCGGGGAAATCCCGATCGGAACCGCTGAGCGCATTGCATTGAATATGCGCCCGGGTCAGGCCTC CACACAGGCCAAGCCATAGTGGTGCGCAGAAATGTCTGGTGAAGAATTTCATTTGCCAAACGTTTCATCTTTTTCTATAGGTCAGAGCCCTAAAGGCTCT GGCCTTGTTTGTTTTCGGGTATCCAAAATTAAGGTCTATGCTTTGACCTTGAACTTTGAATGCCAGCCGCTTAACTCTGCTTGCTATTAACGGGAGCTGT
|
|
| DNA Sequence for Gene |
>AA056_RS14010
ATGTCGATGCCTCGATTGAAAAATTACTTACCCATTTTTGCGGCCGTGATGATGCTAGGGCAGGCAGTCCCGGCCCTGGCAGATGCGTCGGTGGTGCAAC TGCCGGACTTTACGCAATTGGTGGAACAGGCTTCCCCGGCGGTCGTCAATATCAGTACTACGCAGAAACTCCCGGAACGTCGCGTCTCCAGCATGGGGCA AATGCCAGATCTGGAAGGCTTGCCGCCAGGCCTGCGTGACTTCTTCGAACGCAGTATTCCGCAGCCACCGCGCAGCGGCGGCGGGCGTCAGCGCGAGGCC CAGTCCCTGGGTTCGGGTTTCATCATTTCTCCTGACGGGTACATCCTGACCAACAATCACGTGGTGGCCGATGCGGATGAAATCATCGTTCGCCTGTCAG ACCGCAGTGAAATGAAAGCGAAACTGATCGGCACTGATCCGCGCTCCGACGTGGCGCTGCTCAAAATCGAAGGCAAAAACCTGCCCGTGCTTAAACTCGG CAAGTCTCAAGATTTGAAGGCTGGCCAATGGGTGGTTGCCATCGGTTCGCCGTTTGGTTTCGATCACACAGTGACCCAAGGCATCATCAGCGCCATCGGC CGTAGCCTGCCGAACGAAAGCTATGTGCCGTTCATCCAGACCGACGTGCCCATCAACCCCGGTAACTCGGGCGGCCCATTGTTCAACCTGGCCGGTGAAG TGGTCGGGATCAACTCCCAGATCTACACCCGCTCAGGCGGCTTTATGGGCGTGTCGTTCGCAATCCCTATCGATGTGGCGATGGACGTGTCCAACCAGCT CAAAAGCGGTGGCAAGGTCAGCCGTGGCTGGCTGGGCGTAGTGATTCAGGAGGTCAACAAAGACCTGGCTGAATCCTTCGGTCTGGAAAAACCCGCCGGT GCGCTGGTGGCCCAGGTACTGGAAGACGGTCCGGCTGCCAAAGGCGGGCTGCAAGTGGGGGATGTGATCCTCAGCATGAACGGTCAGCCGATTGTCATGT CAGCCGATTTGCCGCATCTGGTAGGGGCACTCAAGGCTGGCAGCAAGGCAAGCCTTGAAGTCGTGCGCGACGGCAAGCGTAAAACCCTCGACTTGACCGT GGGCGCCATCCCCGATGAAGGCAAGGAAATGGATTCGCCAAGCGGCGCAGAGCGCAGCAGCAACCGTCTGGGCGTTTCTGTGGCGGACTTGAGTGACGAG CAGAAGAAAACCAACGACATCAAAGGTGGCGTGATCATCAAGGATGTTCAGGATGGCCCGGCTGCCTTGATTGGTCTGCGTCCAGGCGACGTCATCACGC ACCTGAACAACCAGGCGATCAGCGATGCCAAGCAGTTCACTGAAATTGCCAAGGCATTGCCGAAAAACCGTTCGGTGTCAATGCGCGTCCTGCGTCAAGG CCGTGCCAGTTTCATTACTTTCAAACTGGCAGAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCAGTGCGCTCGCTTGGGGTGAGGGAGGTCATCTCCACCTGAGGTGAGCACTGCACAACAAAAAAGCCCGTATCAAGCGATACGGGCTTTTTTTGTGCGG CGTGTTATTTCTTTTTTTGCTTGGGAATTCTGACGAGCTGCGTGTTGGAGTACATGTCATGCCAGGTGCGTTTTTGCTTGTCGATCAATGACCAGAAAAA ACCGAGCCCGAAACATAACCACGAGCCGATGGACACAATAAAACGCAACAGCGCCTGCCACAGGCTGATAGCTGTTCCGTCTGCGTTCTGAACACGAACC CCCCACACTTGCATGCCCAGGGTTTGCCCGGAGTGGGTCCAGAACTTGGCAAAGAAGCCGAACAAGACAAAAAACAGGAGTGTCGACAGCAGCGGATCGC CGTCAAGGGCACCGGCTTCAGACAAGGCACGCATTTTGGCCTCGCCGATAAAAGCCATCATGATCAGTTTGTAAAGGAACGTGGTGACGATCATCAGCGC
|
|
| Amino Acid Sequence |
>serine peptidase
MSMPRLKNYLPIFAAVMMLGQAVPALADASVVQLPDFTQLVEQASPAVVNISTTQKLPERRVSSMGQMPDLEGLPPGLRDFFERSIPQPPRSGGGRQREA QSLGSGFIISPDGYILTNNHVVADADEIIVRLSDRSEMKAKLIGTDPRSDVALLKIEGKNLPVLKLGKSQDLKAGQWVVAIGSPFGFDHTVTQGIISAIG RSLPNESYVPFIQTDVPINPGNSGGPLFNLAGEVVGINSQIYTRSGGFMGVSFAIPIDVAMDVSNQLKSGGKVSRGWLGVVIQEVNKDLAESFGLEKPAG ALVAQVLEDGPAAKGGLQVGDVILSMNGQPIVMSADLPHLVGALKAGSKASLEVVRDGKRKTLDLTVGAIPDEGKEMDSPSGAERSSNRLGVSVADLSDE QKKTNDIKGGVIIKDVQDGPAALIGLRPGDVITHLNNQAISDAKQFTEIAKALPKNRSVSMRVLRQGRASFITFKLAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|