Pseudomonas fluorescens AU11235, AA056_RS12380
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11235 Contig_22, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACGCCGATCTGGGCGCTGGCAAATTGGCAGATAAACCATTCAAGGCAATTGGGCGCCCAGATGCCCAGCCGGTCGCCAGCTTGCAGCCCCAGCGCCATG AAGCCACGGGCATGCAGGTCGACAGCACGGCTCAATTGCGACCAGCTCAGGCGCTGGTGTTGATGGCGCACAATCAGCGCCTCGTTCTCGGGGTAACGCG CGGCCGTACGCTCAAACGCCTGGCCGATGGTCAATGTCAGCAGGGCCTTGTCCTGCGCACCCTGGCTGTAACTGGGGGCTGATTGCGACGTCATGACAAC TCCTCTTGTGATTATTGTTGGGAGTATGGGAAAGCGCGCACAGGCGCCCTCTCAATCAGAAGAATAGCAATCACTCTGGCTTAAGTTGACGTTAACGTAA AGGTCATTGACAGGCCCAGGTGCCAAGTTTACGTTTACGTAAAGCTTCCCCCTGGCGACGCAGTAACCGCCTCATACAAGAACAATGAACAAGGTGCCCC
|
|
| DNA Sequence for Gene |
>AA056_RS12380
ATGAGCTACCCGACTTTGAACTTCGCCCTGGGCGAAACCATCGACATGCTGCGCGAACAGGTCCAGTCATTCGTCGCCGCTGAACTGGCGCCCCGCGCAG CGCAAATCGACAAGGACAACCTGTTCCCGGCAGACATGTGGCGCAAGTTTGGCGACATGGGCTTGCTGGGCATCACCGTTCCGGAAGCCTACGGCGGCAC CGGCCTCAGCTATTTGGCCCATGTGGTGGCCATGGAAGAAATCAGCCGTGGTTCGGCGTCGGTTGCGCTGTCCTACGGTGCGCATTCGAACCTGTGCGTG AACCAGATCAACCGCAACGGCAGCGATGCTCAAAAACGTCACTACCTGCCCAAACTGATCAGCGGCGAACACATCGGCGCGCTCGCCATGAGCGAGCCCA ACGCCGGCTCTGACGTGGTGTCCATGAAATTGCGCGCTGACAAGCGCGGCGACCATTTCGTGCTCAACGGCAGCAAAACCTGGATCACCAACGGCCCCGA CGCCGACACTTATGTGATCTACGCCAAGACCGACCTCGAAAAAAAGGCCCATGGCATCAGCGCCTTTATTGTCGAGCGCGACTGGAAAGGCTTCAGCCGC AGCAAGCATTTCGACAAGCTGGGCATGCGCGGCTCCAACACCGGCGAGCTGTTTTTCGACAACGTTGAGGTGCCTGAAGAAAACCTGCTGGGCCCCCTCA ACGCCGGGGTCAAGGTGCTGATGAGCGGCCTCGATTACGAGCGCGTCGTACTGTCGGGCGGCCCGACCGGCATCATGCAAGCCTGCATGGACCTGGTGGT GCCCTACATCCATGACCGCAAACAGTTCGGCCAAAGCATCGGGGAGTTTCAGCTGATTCAGGGCAAAGTGGCCGATATGTACACCCAACTCAATGCCAGC CGTGCCTACCTGTATGCGGTCGCGGCCGCCTGTGAGCGGGGCGAAACCACCCGCAAGGACGCCGCCGGGGTGATCCTCTACAGCGCCGAACGCGCCACGC AAATGGCCCTCGACGCCATCCAGATCCTCGGCGGTAATGGCTACATCAATGAATTCCCGGCCGGACGTCTGCTGCGCGACGCGAAGCTGTACGAAATCGG TGCGGGCACCAGCGAGATCCGCCGGATGCTGATTGGCCGCGAACTCTTTAACGAAACCCGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGAGTGGCCCATGTCTATCTTGCACAGCACCGTCAACCCGCGCTCCCCCGAGTTCGCCGCCAATCGCGACGCCATGCTCAAACAGGTGGACGCCCTGCAC AGCGTGCTCGCCCATGTGCAACAGGGCGGCGGCGCCCGCGCCCAGGAGCGCCACACCGCCCGGGGCAAACTGCTGCCGCGTGAACGCATCGACCGGCTGG TGGACATTGGCTCGCCCTTCCTTGAACTGAGTCAGCTGGCGGCTTACGAGGTGTACGGCGAGGACGTCCCGGCTGCCGGCATCATTGCCGGCATCGGTCG GGTTGAAGGCGTGGAATGCATGATTGTGGCCAACGACGCCACGGTCAAAGGCGGCTCGTACTACCCGCTGACGGTCAAAAAGCACCTGCGGGCGCAGACC ATTGCCGAGCAAAACCGACTGCCTTGCATTTACCTGGTGGATTCGGGCGGCGCCAACTTGCCGCGTCAGGACGAAGTCTTCCCGGACCGCGAGCACTTTG
|
|
| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPTLNFALGETIDMLREQVQSFVAAELAPRAAQIDKDNLFPADMWRKFGDMGLLGITVPEAYGGTGLSYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGSDAQKRHYLPKLISGEHIGALAMSEPNAGSDVVSMKLRADKRGDHFVLNGSKTWITNGPDADTYVIYAKTDLEKKAHGISAFIVERDWKGFSR SKHFDKLGMRGSNTGELFFDNVEVPEENLLGPLNAGVKVLMSGLDYERVVLSGGPTGIMQACMDLVVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAAACERGETTRKDAAGVILYSAERATQMALDAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|