Pseudomonas fluorescens AU11235, AA056_RS12270
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU11235 Contig_22, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAATGGTCGGTGCGCAGTTTCTTCAGGCTTTCTTTCAGGCTCGGGATCAGTCTGTCCTGGCTGAAGTTATCGACCCAAATCTTGCTGGTGATGTACAGC GAGTCACGCGCCACACCGCTGTCGGCAATGGCTTGGCCCACATCCGCTTCGTTTTCGTAGATCTGCGCGGTGTCCACTGCGCGGTAACCCAGTTCAAGGG CGTTTGTGACCGAGTCGATGACCACTTGGCCTTTAAGTCGAAAAGTACCGAGGCCGAAGGCTGGAACTGTCATGGATAACTCCTTGGAGGTTGTAAGAAT GAGGCTGAGTATCCCTGTCCTTGCGGGTCTGAAAAACCCGTCCTGAGACAAAGCTCTCGTGAGCTCAGGTCATGAATCACTGAGTGCGCTCACGCGCAGG AGTTCCGGCTGCCGGATACAGGCTCACGGCCTAAATTTCGTCGGCGCACGCACGTTCTAGCTTGGATAACGCCTGCATTCAGGCTGGGACAGGTAGGGCA
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| DNA Sequence for Gene |
>AA056_RS12270
ATGACGATTTCTCGACGAGGGTTCATCGCGGGTTTAGCGATCACCGGCGCAGCAGCGCCAGCAGCGTTCTATGGCCATCGCGAGTTGACCCGGGTGGACG AGCCGGTCACCCCCGGCGAGGCAACGGTCGACCTTGCGGACACTGCCGGGCAGCAACTGGCTGACCAACTGCGTGGCCTGTGGACGATCCGCTTCAACGG CCGCGATGCCGGACTGGACGGCTTGCCGTCCGATGACCTCGAAATGTGGCTGGACATCGCGCCGCGTGGCCGAGGGGTACGTGGCTATCTGGACACGGCG CAGGTGTTGCACAGCCAGCAAACCCCGCGCTACCGCATTCTGGGCGACCTGGTTGAACCCGACGCCAAACACCTGCACTGGCGCCTGACGCGCAGCGATG CGCCTCATGGCGTGCCCGATTACGAGTTGAGTTTCAGCCTTGATGAGGTGTGGGGCATGTATGGCAACGCGGGCAGCGGCACGTTGAGTGGCCGGGTGCA GCGTCTGGATCGCCCGCTGGCATTGCCCGAGCAGGACAACCACGTTGTCGCGCTCAAACGCACCTTTCCTGAAGCCCGCGAGCGTATCGGCCTGAACCCG ACCCTGCTGGCGTGGCTGGTGTCCCCGGAACACCGTTTGTTTCACCAGCTTTGGCATGCCTCACGCGACACCTGGCACGACTTGTCCGAGACCAAGCGCA ATGCCTTGCGCGGCATCGGCTGGCAGCCCGGTCAGCGCGACAAGGAGCGCGACGCCCGCGGGCCACGCAAAGACCGCAATGGCTCGGGGGTGGATTTCTT TTTTATGCACCGGCACATGTTGCGCACGGCGCGCTCGATGCAGCATTTGCCCTCGTGGCCCGCGTTCCCGATGCCCCAGCCGGAGCTGGAGCGCGACCGC GCGGGGTTCGCCCGTTACTTTGACAACCACGACGGCAGCGCCTTGCCACCGACCTGGTTGGCGGAGGGTGATGAGTTCTACACCCAGTGGCTGAGTGATA TCAAACAGCCTGAGACCTTTCACAGTAATTTTGAGGTGTGGGAGTCGCGCTACCGTGACCCGCGTTACCTGTCGACATTGACCCTCGGCCAGTTTGGTTC CGAGGTTGAGCTGGGGCTGCATGACTGGCTGCACATGCGCTGGGCGTCAGTGCCGCGCGATCCTTCCAACGGCGCTCCGGTGCCTTGGGCGCGTGACCCT GCGGATTTTTCGGCGCGCTGGTACGTGCCTGAAAACGACTTTCTGGGCGATCCGTTTTCGTCCCACGTCAACCCCGTGTTCTGGTGCTTTCACGGCTGGA TCGATGATCGCCTGGAAGACTGGTTTCGCGCCCACGAACGCTTTCACCCTGGCGAACTGACGCGTAGGGAAGTCAACGGTGTGCCGTGGTTCGCACCGGG TCGCTGGGTCGAAGTCGACGACCCGTGGTTGGGGCCCATCACCCACGGGTGCAGCACCACGCCGGGGCTGGCGTCGGGCAAAACCGTGGAAATGGACCCT GAAACCATGAAACTGGCGTTACGCATTACCTTTGGGGATGAAAAGACCCTGGACAGCTTGTTCCGAAAAATTCCGCGCCGCCCCTGGTATGCGCGGCATC TGGTGACCAAGGCCCCGCACCGCGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCTGAAGGCGGGCGTATCCGATGGGGGACCGTGACGGGTAAGCGTCATGAATTCAACGGCCAGGGTCCCCGTTCATTTTGTTATACAAACCGGGTTGAG TTTCAGGAGGGCCAGGTCCTGGCAAGGCCGTTGCCCGATCAGGTACACATCGCCCAGGTAGCTGGTCAGGCAGGGCGCAGACACGAAGCGTCCTGCCGTT TGCGAGTAGATATCCACATCGAGATACGGACGAAACGTTTCAACGGTGTATTGGTTGCCCGACCGTTTGCGGGTGGCGCAATAAAAGTATTCCCCCTGGG TATGCAGCGCGGAGGCGCCATAGGTGTCCGGTTGGTTGGACACATGGATCGGGTACTCCTCATCGATCAGTTGAAAGGTGACCAGTTGCCCGGTGGCACT TCGGGTTGAAACGAAGGGCATGTCTTTATGGATACACAGGGAAGGACTTTCGACGACGCTTTTGTGGTCTTCGCGTACGTGGGGTTGCCAGCCGGAAGGC
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| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MTISRRGFIAGLAITGAAAPAAFYGHRELTRVDEPVTPGEATVDLADTAGQQLADQLRGLWTIRFNGRDAGLDGLPSDDLEMWLDIAPRGRGVRGYLDTA QVLHSQQTPRYRILGDLVEPDAKHLHWRLTRSDAPHGVPDYELSFSLDEVWGMYGNAGSGTLSGRVQRLDRPLALPEQDNHVVALKRTFPEARERIGLNP TLLAWLVSPEHRLFHQLWHASRDTWHDLSETKRNALRGIGWQPGQRDKERDARGPRKDRNGSGVDFFFMHRHMLRTARSMQHLPSWPAFPMPQPELERDR AGFARYFDNHDGSALPPTWLAEGDEFYTQWLSDIKQPETFHSNFEVWESRYRDPRYLSTLTLGQFGSEVELGLHDWLHMRWASVPRDPSNGAPVPWARDP ADFSARWYVPENDFLGDPFSSHVNPVFWCFHGWIDDRLEDWFRAHERFHPGELTRREVNGVPWFAPGRWVEVDDPWLGPITHGCSTTPGLASGKTVEMDP ETMKLALRITFGDEKTLDSLFRKIPRRPWYARHLVTKAPHRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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