Pseudomonas fluorescens AU7350, AA040_RS01735
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU7350 Contig_36, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGCATGACCGCGTTTGTTTGCGATTACTTGCGCATCATGTCGTCGGGCAACATGGCGCCCCACGAACTCGAAGGCTTGTTTGACATGGAGCTGTTCAG CCTTAAAGAAGAGCTTGAGCACCCGTACCACGCCGTGACCGGGATTGCTGATGGCATGCCGGGCTTCGGTATTGTGGCTGCGGTACTGGGTATCGTGGTG ACCATGGCTTCGCTGGGCGACGGCGATCAGGCGATGATCGGCGTGCACGTGGGTGCGGCGCTGGTCGGTACGTTCTTCGGTATTTTGGCGGCCTACGGTT TCTTCGGCCCGCTGGCGACCTCGCTCTCCCACGATGCGAAAGAAGAACTCAATGTGTACGAATCCATCAAGGCGTCGCTGGTCGCTTCGGCCTCGGGCAT GCCGCCGTCGCTGGCGGTCGAGTTCGGTCGTAAAGTGCTGTATCCCAAGCACCGTCCGAGCTTTGCCGAGCTGGAACAAGTAGTCCGCGGTCGCTGATCC
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| DNA Sequence for Gene |
>AA040_RS01735
ATGGAAAACAATCAGCCAATCATCATCAAGCGCGTCAAGCGCTTCGCGGCGGGCCACCACGGTGGCGCCTGGAAAATTGCGTTCGCTGACTTTGCTACGG CGATGATGGCGTTCTTCCTGGTGCTGTGGCTGATGTCCACAGCCACCCCGGAACAGAAAATCGCCATTGCCGGTTACTTCAAAGACCCGATCGGGTTCAC CGAAACCGGCACGCCGTACATCATCGATTTGGGAGGCACGCCGACCCTGGCGCCGGACACCACCCTCAATCCTGAAGAAAAAATGCAGCCTCAGCCCGAC AAGATCACGGTCGACACCGATCAGGTCGAAGGCATGGCCGAGCAAGTCGAGAAAGAACGGCTCGAACTGCTGCTTCAGGAGTTGCAGAACAAGGTCGAAG AAAACCCGCAATTGCGCAAATTCAAAGACCAGCTGTTGTTCGAAATCACGCCTGACGGCCTGCGCATCCAGATCATGGACGCGGAAAACCGTCCGATGTT CGACGTCGGCAGTGCGCGCCTCAAGCCTTACTTCGAAGACATATTGCTGGCCATGGCGGACACCATCAAAGCCGTGCCGAACAAAGTCAGCATCAGCGGG CACACCGATGCCACGCCGTATGCCAGCGATGCGGAGTTCGGTAACTGGGAATTGTCGGCCAACCGCGCAAACGCAGCGCGCCGGGCATTGATCGCGGGCA GTTATCCACATGATCAGGTCGCGCGGATTGTGGGTTACGCCTCGTCGGTGCTGTTCGACAAGGTCAACCCGCTGAACCCGATCAACCGCCGCATCGACAT CGTGGTGTTGACGAAGAAAGCGCAGCAGGCGATTGAAGGTGAACAGGGCACCGAGATGGCCACGCCGCAGGCGCCGACCACTCCGATTGACCCGATCACC CTGCCGGCTGACCAAGTGCCACCCGCCATGCATGAAGAACGGGAAAAACTGAACCTGTTTGATGACAAGGCGCCAGCAACACCGAAGCCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCCGCATGCCTTCACCCTCGCTCAGAGGGTGAAGGCACCGTTCAGTAACTCGACTCAGGCAGGCTGGCGATGATCGAACGGTAGCTGTTCATGCGTTGT TGCTGTACGCGGCCATCTTCCAGCGCCATCAGCAAGGCACAGCCCGGCTCGCGGTCGTGCTTGCAGTCGCGGAAACGGCAACGGCCGATCAAATCGTGGA ACTCGATAAACCCGGCTTCCACATCCGCCCGGCTCACGTGGCCCAGGCCAAACTCGCGAATACCAGGGGAGTCGATCAGCTCGCCGCCACCCGGGAAGTG GAACAGCCGCGCCGTGGTCGTGGTGTGCGTGCCCTGACCGGAAATTTCGGACAGCGGTCCGACCCGCAGGTTGACCTCGGGCAGCAAGCTGTTGACCAGC GATGACTTGCCCACGCCCGACTGACCCACAAACACACTGATGTGCCCGTCCAGCTTGGCTTGCAACTGCTGCATGCCGTCGCCGTGATGTGCGGACACTT
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| Amino Acid Sequence |
>flagellar motor protein MotB
MENNQPIIIKRVKRFAAGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYFKDPIGFTETGTPYIIDLGGTPTLAPDTTLNPEEKMQPQPD KITVDTDQVEGMAEQVEKERLELLLQELQNKVEENPQLRKFKDQLLFEITPDGLRIQIMDAENRPMFDVGSARLKPYFEDILLAMADTIKAVPNKVSISG HTDATPYASDAEFGNWELSANRANAARRALIAGSYPHDQVARIVGYASSVLFDKVNPLNPINRRIDIVVLTKKAQQAIEGEQGTEMATPQAPTTPIDPIT LPADQVPPAMHEEREKLNLFDDKAPATPKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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