Pseudomonas fluorescens AU10414, AA048_RS05885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU10414 Contig_40, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGCACTGTATGAAAGCTGGTCGATTCCGATTGCGGTCATGCTGGTGGTCCCTCTGGGGATTATCGGTGCACTGCTGGCCACCAGCCTGCGGGGGTTGT CCAACGACGTGTACTTCCAGGTGGGCTTGCTGACGACCATCGGTCTGGCCTCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAAAGAGCTGCACGAACA AGGGCGAACCTTGACCGAAGCCGCCATTGAGGCCTGCCGCATGCGTCTTCGCCCGATCATCATGACCTCGCTGGCGTTCGTACTGGGCGTTATCCCGCTG GCCATTTCTTCGGGCGCAGGTTCGGGTAGCCAGCACGCCATTGGTACAGGTGTGATCGGCGGTATGATCACTGCAACTGTTCTGGCCGTGTTCTGGGTGC CGCTGTTCTTCGTCGCGGTGTCGTCCTTCGGCAGCGGCAAAGACAAGGACTCGGAAAAGAAAGTGGACCTGACTAAAACTCCAAATCAAGAGGCTGGCCA
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| DNA Sequence for Gene |
>AA048_RS05885
ATGAGCAAGTCGCTTCTCGCAGTCGCCGTAGCAGCGTTTACGCTGGGCGGTTGCTCGCTGATCCCTGACTACCAGCGCCCTGAAGCGCCGGTAGCAGCGC AGTACCCGCAAGGCCCGGCCTACAAGCCTAACGAAGCGCCAGCTCAAGCGGCGGCAGAACAAGGCTGGCGTGAGTTCTTCCGCGACCCGGCCCTGCAACA GTTGATTCAGACAGCTCTGGTGAACAACCGCGACCTACGGGTCGCGGCCCTGAACATTGATGCGTATGCCGCGCAGTACCGTATTCAACGTGCCGATCTG TTCCCGGCGGTGACGGCCAATGCCAGCGGCAGCCGTCAACGGATGCCAGCACGCCTGTCGCAAACCGGCGAGTCAGGCATCACCAGCCAATATTCGGCGA CCCTCGGGGTCAGCGCGTACGAGCTGGATCTGTTCGGTCGCGTTCGCAGCCTGAGCGATCAGGCCTTGCAGAACTACTTTGCGACTGAAGAAGCCCGACG CACCACTCAGATCAGTCTGGTTGCCAGCGTCGCCAATGCTTACTTGACCTGGCAAGCCGACAAAGAGCTGCTCAAGCTGACTGAAGACACGCTCAAGGCG TTCGACGAGAGCTACAAGCTCACCTTGCGCAGCAATGAAGTGGGCGTTGCTTCGGCACTGGAAGTCAGCCAGGCGCGGACCTCGGTGGAAAACGCCAAGG TTCAACTGGCGCGCTACACGCGTCAGGTGGCTCAGGATCAGAACAGCCTGGCCTTGCTGCTCGGCACGACCCTTCCGCAGAACCTGCCCGCGAGTAAACC GCTCGCCGCTGATCTGCTGACAGAAGTACCAGCAGGCCTGCCTTCAGATTTGTTGCAACGCCGTCCTGACATTCTGGAAGCCGAGCATAAGTTGCTGGCC GCCAATGCCAATATCGGCGCCGCACGTGCCGCGTTCTTCCCGAGCATCAGCCTCACCGCCAATGCCGGGACCTTGAGCCCGGACCTGTCGGGGCTGTTCA AGGGAGGCTCGGGCACTTGGCTCTTCTCGCCGCAAATCAACCTGCCCATCTTTAACGCAGGGGCTTTGCGCGCCAGCCTGGACTACTCGAAAATCCAGAA GGACATCACCGTCTCGCAGTATGAGAAGGCGATCCAGACAGCATTCCAGGAAGTATCTGACGGCCTGGCAGCGCGCCAGACCTACAATCAACAGTTGCAA GCCCAGACGGACTTCGTTAACGCCAACCAGGATTACTACCGGTTAGCCGAGCGTCGTTATCGGATTGGTGTCGACAGCAACCTGACGTTCCTTGATGCAC AACGCTCCCTGTTCAGCGCGCAACAATCGTTGATCAGTGACCGCCTTTCGCAGCTGACCAGTGAAGTCAATCTGTACAAGGCGCTGGGGGGTGGCTGGTA CGAACAGACCGGGCAAAACCGCCCGATCTCGTCCGAGCCGCCTAAGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGAGAAACTGCTAAACACACAAACCCGCCTTTTGGCGGGTTTGTGTGTTCAAGGGCGGTGAATTTACCTAAACGCGCTGAGCATTTTCTCCCCTGACGT GCCTTGGCCGTTGATCACACCAGTGGGCGTAAAAATGAAATACATGGCTTAAAGTCCTGACTGCCTTATTAGTGGATATCAGATCCCGACCCAACATGCT GCTTTGCGCAACGATGCTTAGCCCTTATGGCAACCGTAGGATATGCAAACTTGATAGTCGCCACTGCGGTTCAGCACTGTATAAGCGGCCCTGAAAGATT GATCCGCCTCAGTTGCCAGGCCATTTAACTACCTGACTGAACACGCAGGGTGATTTCACCCATCGCTCTTTGCGCACGTGCAACCCGTACCGTGTGGATA TAGAACGCGCGTTCTATATCCACACTTCACTTATCCAAGAACACCCCCTCCTCAGAAGTTATTTGCTCCTGAAAGACGCTCATTGATTAATCATTCAATA
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| Amino Acid Sequence |
>multidrug transporter
MSKSLLAVAVAAFTLGGCSLIPDYQRPEAPVAAQYPQGPAYKPNEAPAQAAAEQGWREFFRDPALQQLIQTALVNNRDLRVAALNIDAYAAQYRIQRADL FPAVTANASGSRQRMPARLSQTGESGITSQYSATLGVSAYELDLFGRVRSLSDQALQNYFATEEARRTTQISLVASVANAYLTWQADKELLKLTEDTLKA FDESYKLTLRSNEVGVASALEVSQARTSVENAKVQLARYTRQVAQDQNSLALLLGTTLPQNLPASKPLAADLLTEVPAGLPSDLLQRRPDILEAEHKLLA ANANIGAARAAFFPSISLTANAGTLSPDLSGLFKGGSGTWLFSPQINLPIFNAGALRASLDYSKIQKDITVSQYEKAIQTAFQEVSDGLAARQTYNQQLQ AQTDFVNANQDYYRLAERRYRIGVDSNLTFLDAQRSLFSAQQSLISDRLSQLTSEVNLYKALGGGWYEQTGQNRPISSEPPKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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