Pseudomonas fluorescens AU10414, AA048_RS17230
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 211 | 263 | 3.4E-10 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 271 | 539 | 4.3E-45 |
| CDD | cd06225 | HAMP | - | - | 214 | 258 | 8.82019E-7 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 324 | 503 | 2.8E-34 |
| PANTHER | PTHR32089 | METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB | - | - | 10 | 539 | 1.9E-77 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 208 | 259 | 1.0E-9 |
| Pfam | PF12729 | Four helix bundle sensory module for signal transduction | IPR024478 | Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain | 3 | 180 | 9.8E-15 |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 231 | 540 | 7.85E-60 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 210 | 540 | 2.4E-67 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.